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[181818_at]

Description Y53H1C.3 /REP_DB=WormBase Gene ID /WP=CE24435 /TR=Q9NA89 /GB=CAB55065.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.8
(-2.7)
A 		3.6
(3)
A 		1.7
(-3)
A 		3
(1.1)
A 		2
B 1.4
(-3)
A 		1.7
(-2.2)
A 		2.2
(-0.9)
A 		3.7
(3)
A 		2
C 2.3
(-1.2)
A 		1.8
(-3)
A 		2.6
(-0.2)
A 		3.5
(3)
A 		2
avr 1.8
(-3) 		2.4
(-0.8) 		2.2
(-1.5) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.1
(3)
A 		1.3
(-3)
A 		2
(-2.1)
A 		2.3
(-1.8)
A 		2.3
(-1.8)
A 		2
(-2.1)
A 		5
B 1.5
(-3)
A 		1.5
(-3)
A 		1.8
(-2.1)
A 		1.9
(-1.8)
A 		3.5
(3)
A 		3.2
(2.1)
A 		2
C 1.2
(-3)
A 		1.9
(-1.7)
A 		2.4
(-0.8)
A 		2.4
(-0.8)
A 		1.9
(-1.7)
A 		4.4
(3)
A 		3
avr 2.9
(1.9) 		1.6
(-3) 		2.1
(-1.1) 		2.2
(-0.8) 		2.6
(0.8) 		3.2
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(1.5)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0
B 0.5
(-1.5)
A 		0.4
(-3)
A 		0.5
(-1.5)
A 		0.8
(3)
A 		0
C 0.8
(1.5)
A 		0.5
(-3)
A 		0.9
(3)
A 		0.6
(-1.5)
A 		0
avr 0.7
(3) 		0.6
(-3) 		0.6
(-3) 		0.6
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.1
(3)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		0.6
(-1.3)
A 		0.7
(-0.4)
A 		0.5
(-2.1)
A 		1
B 0.5
(-2.4)
A 		0.5
(-2.4)
A 		0.4
(-3)
A 		0.5
(-2.4)
A 		1.4
(3)
A 		1.2
(1.8)
A 		1
C 0.4
(-3)
A 		0.6
(-1.9)
A 		0.6
(-1.9)
A 		0.5
(-2.5)
A 		0.6
(-1.9)
A 		1.5
(3)
A 		1
avr 0.7
(-1) 		0.5
(-3) 		0.5
(-3) 		0.5
(-3) 		0.9
(1) 		1.1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2099
Sequence Type Exemplar sequence
Representative Public ID Y53H1C.3 NCBI
Target Description Y53H1C.3 /REP_DB=WormBase Gene ID /WP=CE24435 /TR=Q9NA89 /GB=CAB55065.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060515
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010651 ENSEMBL cdna:SNAP chromosome:CEL140:I:11426006:11428288:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060515 8/11 Cross Hyb Matching Probes None
GENEFINDER00000010653 8/11 Cross Hyb Matching Probes None
Y53H1C.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11425936-11428219(+) 96.23 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70076 Hypothetical protein Y53H1C.3 [Caenorhabditis elegans] emb|CAB55065.2| Hypothetical protein Y53H1C.3 [Caenorhabditis elegans] ref|NP_492916.1| Y53H1C.3 [Caenorhabditis elegans] 0.0
blast AAB54273 Hypothetical protein R155.3 [Caenorhabditis elegans] ref|NP_497485.1| R155.3 [Caenorhabditis elegans] 4.0E-10
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 7.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:181818_AT
gacgttcctcatttgtacaatctccagaaaatagtactgttgaaatcagaattccggatg
cttcacctatcattggaaggcttcgaagaacaggctacagactctatagagtctattgtt
ctcgaggattacgaacaactttttgtgcaagctcggagcattcctagcatcgagggagac
ttcgaagcaatagggaattctgttggagagctggcacgacttgtaacaaatgtaactgtc
aaggagattctgagaaatgtcaatgtatcactgaactcgttggatttggatttcacttcc
taccgtgtgcactttgcgaatgtggctttgagggagcttgacgtattctttgcgaatttc
tcgaagaagttcgaaaagccggaggagctggatgttcgggtggagcagaaggaaaggaga
aaggcaaagaatccaaatgaacgtgagagattggacaggttagtggcttctcactcggtg
gacctacagaaattgcacgtggccacgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTCCTCATTTGTACAATCTCC 237 379 1705 Antisense
GATGCTTCACCTATCATTGGAAGGC 710 409 1761 Antisense
CAAGCTCGGAGCATTCCTAGCATCG 483 185 1852 Antisense
GGAGAGCTGGCACGACTTGTAACAA 248 519 1909 Antisense
GGATTTGGATTTCACTTCCTACCGT 44 511 1986 Antisense
TTCCTACCGTGTGCACTTTGCGAAT 382 699 2001 Antisense
GGAGCTTGACGTATTCTTTGCGAAT 337 521 2037 Antisense
CGGAGGAGCTGGATGTTCGGGTGGA 441 241 2084 Antisense
ATTGGACAGGTTAGTGGCTTCTCAC 317 3 2154 Antisense
TTCTCACTCGGTGGACCTACAGAAA 1 689 2172 Antisense
TACAGAAATTGCACGTGGCCACGCG 480 641 2189 Antisense
Sequence Source Affymetrix Proprietary Database