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[181816_s_at]

Description C18E9.10 /REP_DB=WormBase Gene ID /WP=CE20520 /TR=Q9XTH1 /GB=CAA92698.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 63      6grp_total > 74      4grp_total > 38      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 605.3
(3)
P 		530.5
(-1.6)
P 		506.7
(-3)
P 		536.8
(-1.2)
P 		99
B 632.5
(3)
P 		515.4
(-3)
P 		535.3
(-2)
P 		556.3
(-0.9)
P 		117
C 523.8
(0.5)
P 		548.4
(3)
P 		489.9
(-3)
P 		537.8
(1.9)
P 		59
avr 587.2
(3) 		531.4
(-1.4) 		510.6
(-3) 		543.6
(-0.4) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 678.6
(0.5)
P 		557.1
(-3)
P 		662.3
(0)
P 		758
(2.8)
P 		619.7
(-1.2)
P 		765.3
(3)
P 		208
B 527.2
(-0.9)
P 		431
(-3)
P 		557.2
(-0.3)
P 		706.9
(3)
P 		602.6
(0.7)
P 		561.9
(-0.2)
P 		276
C 581.6
(-0.7)
P 		459.9
(-3)
P 		774.7
(3)
P 		639.7
(0.4)
P 		656.9
(0.8)
P 		591.6
(-0.5)
P 		315
avr 595.8
(0.1) 		482.7
(-3) 		664.7
(2) 		701.5
(3) 		626.4
(0.9) 		639.6
(1.3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 220.4
(3)
P 		115.2
(-1.5)
P 		132.5
(-0.7)
P 		78.6
(-3)
P 		142
B 201.7
(3)
P 		127.3
(-2.4)
P 		124
(-2.6)
P 		118.6
(-3)
P 		83
C 173.4
(3)
P 		157.7
(1.9)
P 		170.7
(2.8)
P 		90.7
(-3)
P 		83
avr 198.5
(3) 		133.4
(-0.8) 		142.4
(-0.3) 		96
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 125.1
(-3)
P 		198.1
(3)
P 		144.2
(-1.4)
P 		192.3
(2.5)
P 		187
(2.1)
P 		186.3
(2)
P 		73
B 183.4
(-0.4)
P 		143.5
(-2.6)
P 		135.3
(-3)
P 		187.2
(-0.2)
P 		244.8
(3)
P 		209.5
(1.1)
P 		110
C 215.6
(3)
P 		140.3
(-2.2)
P 		197.2
(1.7)
P 		128.6
(-3)
P 		212.6
(2.8)
P 		198.1
(1.8)
P 		87
avr 174.7
(-1.3) 		160.6
(-2.8) 		158.9
(-3) 		169.4
(-1.9) 		214.8
(3) 		198
(1.2) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181816_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3717
Sequence Type Exemplar sequence
Representative Public ID C18E9.10 NCBI
Target Description C18E9.10 /REP_DB=WormBase Gene ID /WP=CE20520 /TR=Q9XTH1 /GB=CAA92698.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063504 NCBI Caenorhabditis elegans C18E9.10 (C18E9.10) mRNA, complete cds. 11/11 None
C18E9.10 ENSEMBL cdna:known chromosome:CEL140:II:8955150:8964053:-1 gene:C18E9.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035639 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035660 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8955321-8964050(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E9.10
Entrez Gene 174427 Entrez gene
SwissProt Q9XTH1 EMBL-EBI
WormBase CE20520 Wormbase
Functional Annotations
Ortholog
ID Title Organism
YEAST_2:1773760_AT Non-essential tetra-spanning membrane protein found mostly in the late Golgi, can suppress some sed5 alleles; may be part of the transport machinery, but precise function is unknown; similar to mammalian syntaxin 5 Sc
Protein Similarities
Method ID Description E-Value
blast CAA92698 Hypothetical protein C18E9.10 [Caenorhabditis elegans] emb|CAA93859.1| Hypothetical protein C18E9.10 [Caenorhabditis elegans] ref|NP_495905.1| C18E9.10 [Caenorhabditis elegans] 4.0E-93
blast CAE59767 Hypothetical protein CBG03219 [Caenorhabditis briggsae] 2.0E-89
blast XP_786443 PREDICTED: similar to mammalian syntaxin 5 like (25.7 kD) (2J246) [Strongylocentrotus purpuratus] 3.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495905.1 4 96-118,128-150,162-181,185-207
C18E9.10 4 96-118,128-150,162-181,185-207
Sequence
Target Sequence 
>C. ELEGANS:181816_S_AT
tcacttcgcaacaagcttccaacgtctattggaggattttccctactttcccgaagcgaa
acaaccgatagtcagcagttattagttggagatgattctggagatggacaattgccagct
tccagaaatcgaaagagttccggatggttttcgccgtcaactcaagatgaaagtatgttt
ggaatgactcgaactcaaagaattattgcatttttcatgtgcattattggagcaatattc
tgtttttctactgctgctgtactgattcctgtaatattggtatcgactagaaagtttgcc
ggactcaacactcttggatctttgctcttgcttttgagttttgcatttctacttggacca
aaatcatatctgacacatatggcatcaccacaacgacgtctggttactgtatcctatctg
tcagcattgtttgcaacactctattcatccctttggctcaagagcaccatcttcacactg
atcgctgccattttccaaggcttcacactcgtatggtacgtgctctcgtatgttcccggc
ggtgaacgtggcttattcttcatgacatctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTTCGCAACAAGCTTCCAACGT 410 627 97 Antisense
AGAAAGTTTGCCGGACTCAACACTC 555 71 385 Antisense
CAACACTCTTGGATCTTTGCTCTTG 178 189 402 Antisense
GCATCACCACAACGACGTCTGGTTA 502 309 478 Antisense
GTTACTGTATCCTATCTGTCAGCAT 39 447 499 Antisense
TTGTTTGCAACACTCTATTCATCCC 356 707 523 Antisense
TATTCATCCCTTTGGCTCAAGAGCA 567 661 538 Antisense
TCAAGAGCACCATCTTCACACTGAT 247 633 554 Antisense
ACTGATCGCTGCCATTTTCCAAGGC 564 93 573 Antisense
AAGGCTTCACACTCGTATGGTACGT 135 159 593 Antisense
GTGGCTTATTCTTCATGACATCTCT 201 491 644 Antisense
Sequence Source Affymetrix Proprietary Database