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[181815_s_at]

Description T18H9.6 /REP_DB=WormBase Gene ID /WP=CE04974 /TR=Q22550 /GB=AAA83333.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 76      6grp_total > 39      4grp_total > 11      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1396
1 2 3 4 range
A 875.4
(-3)
P 		1169.9
(-1.7)
P 		933.9
(-2.7)
P 		2271.7
(3)
P 		1396
B 1385.9
(-0.6)
P 		1099.6
(-2)
P 		888.9
(-3)
P 		2114.2
(3)
P 		1225
C 1245.6
(-1.5)
P 		972.2
(-3)
P 		1006.7
(-2.8)
P 		2034
(3)
P 		1062
avr 1169
(-1.9) 		1080.6
(-2.3) 		943.2
(-3) 		2140
(3) 		1197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 549
1 2 3 4 5 6 range
A 1516.2
(3)
P 		1217.8
(-0.3)
P 		967.7
(-3)
P 		1194.2
(-0.5)
P 		1335.5
(1)
P 		1252.4
(0.1)
P 		549
B 1252.7
(0.1)
P 		1221.2
(-0.3)
P 		1044
(-3)
P 		1342.9
(1.5)
P 		1305.2
(0.9)
P 		1443.3
(3)
P 		399
C 1185.3
(0)
P 		1337.2
(3)
P 		1090.2
(-1.9)
P 		1232.5
(0.9)
P 		1032.3
(-3)
P 		1128.4
(-1.1)
P 		305
avr 1318.1
(3) 		1258.7
(1.7) 		1034
(-3) 		1256.5
(1.7) 		1224.3
(1) 		1274.7
(2.1) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 318.7
(2.1)
P 		254
(-2.3)
P 		244.1
(-3)
P 		332.5
(3)
P 		88
B 442
(2.8)
P 		271.6
(-1.4)
P 		206
(-3)
P 		450.5
(3)
P 		245
C 412.3
(3)
P 		279.5
(-3)
P 		350.9
(0.2)
P 		343
(-0.1)
P 		133
avr 391
(3) 		268.4
(-2.9) 		267
(-3) 		375.3
(2.2) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 279.5
(-1.1)
P 		433.1
(3)
P 		210.7
(-3)
P 		302.9
(-0.5)
P 		403
(2.2)
P 		304.9
(-0.5)
P 		222
B 435.9
(0.8)
P 		406.5
(0.2)
P 		253.5
(-3)
P 		355.7
(-0.8)
P 		530.3
(2.8)
P 		538.2
(3)
P 		285
C 439.3
(3)
P 		408
(2)
P 		277.5
(-2.1)
P 		247.8
(-3)
P 		334
(-0.3)
P 		377.7
(1.1)
P 		192
avr 384.9
(1.7) 		415.9
(2.8) 		247.2
(-3) 		302.1
(-1.1) 		422.4
(3) 		406.9
(2.5) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181815_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11534
Sequence Type Exemplar sequence
Representative Public ID T18H9.6 NCBI
Target Description T18H9.6 /REP_DB=WormBase Gene ID /WP=CE04974 /TR=Q22550 /GB=AAA83333.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072985 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-27) (mdt-27) mRNA, complete cds. 11/11 None
SNAP00000040414 ENSEMBL cdna:SNAP chromosome:CEL140:V:9212289:9214883:-1 9/11 None
GENEFINDER00000040423 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9212289:9216236:-1 11/11 None
T18H9.6 ENSEMBL cdna:known chromosome:CEL140:V:9212053:9214928:-1 gene:T18H9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9212288-9214883(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mdt-27
Ensembl T18H9.6
Entrez Gene 179303 Entrez gene
SwissProt Q22550 EMBL-EBI
WormBase CE04974 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83333 Mediator protein 27 [Caenorhabditis elegans] ref|NP_505386.1| MeDiaTor family member (mdt-27) [Caenorhabditis elegans] 0.0
blast CAE72132 Hypothetical protein CBG19228 [Caenorhabditis briggsae] 1.0E-137
blast CAE72132 Hypothetical protein CBG19228 [Caenorhabditis briggsae] 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:181815_S_AT
atcgctgtgtcagaaacatttcgtcaaaacgctgttcatgctccgagagtctcaagatta
tctgtcccaccacctttgaaattctcgaaacacgttgaagatgcgaataaaggagttttc
ttagcaatggatgctgttatgaataaaacgaggggtgatttgacatggagattcaaaaga
atcagtcatccatgttttaggaattcaaaaagtctcattgaagttcactactgtgctcgg
cgcccaaatagtgaaaaagaattcgttccgtgtatgaaagctgttattgtactcaaatat
ggaattctcgaagatatgattattggaggcgaagatgaagatttatacaatcaagaacaa
attctacattcgaaacggaaagtctacagagaattcacaaaatcggccaaagagattata
ctttgctcgccagttacaaagtttactgcacccacaaacttcgcccaatgcaacaattac
attcagtcttatgtgaactgtttctcaactaaatgctattattgcaaaaagcatctgcga
cagtttatgcctccaaccgttgtcacgagagaatcgtctccaatcatttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCTGTGTCAGAAACATTTCGTC 594 37 556 Antisense
TCAAAACGCTGTTCATGCTCCGAGA 695 629 579 Antisense
GAGTCTCAAGATTATCTGTCCCACC 557 399 602 Antisense
TCCCACCACCTTTGAAATTCTCGAA 689 597 620 Antisense
TGTGCTCGGCGCCCAAATAGTGAAA 625 555 787 Antisense
GATTATACTTTGCTCGCCAGTTACA 9 429 969 Antisense
CACAAACTTCGCCCAATGCAACAAT 586 193 1008 Antisense
GTCTTATGTGAACTGTTTCTCAACT 438 469 1041 Antisense
GCATCTGCGACAGTTTATGCCTCCA 128 309 1086 Antisense
TGCCTCCAACCGTTGTCACGAGAGA 540 585 1103 Antisense
GAGAATCGTCTCCAATCATTTGCCA 453 391 1124 Antisense
Sequence Source Affymetrix Proprietary Database