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[181814_at]

Description ZC239.6 /REP_DB=WormBase Gene ID /WP=CE15122 /TR=P91556 /GB=AAB37945.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 30      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 80      6grp_total > 31      4grp_total > 19      6grp_highest_sub > 02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 187.4
(-3)
P 		254.8
(-0.5)
P 		194.1
(-2.7)
P 		348.1
(3)
P 		161
B 246.1
(-1)
P 		210.7
(-2.2)
P 		185
(-3)
P 		367
(3)
P 		182
C 188
(-2.7)
P 		248.6
(-0.4)
P 		181
(-3)
P 		336.3
(3)
P 		155
avr 207.2
(-2.2) 		238
(-1.1) 		186.7
(-3) 		350.5
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 250.9
(0.8)
P 		304.5
(3)
P 		270.5
(1.6)
P 		258.9
(1.1)
P 		161.2
(-3)
P 		251.8
(0.8)
P 		143
B 220.5
(-0.5)
P 		237.1
(0.1)
P 		327.4
(3)
P 		226.7
(-0.3)
P 		169.2
(-2.2)
P 		143.3
(-3)
P 		184
C 230.7
(0.3)
P 		300.9
(3)
P 		285.3
(2.4)
P 		225.1
(0.1)
P 		168.4
(-2.1)
P 		146
(-3)
P 		155
avr 234
(0.2) 		280.8
(2.4) 		294.4
(3) 		236.9
(0.3) 		166.3
(-3) 		180.4
(-2.3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 68.3
(3)
P 		55.3
(-1.4)
P 		50.7
(-3)
P 		50.9
(-2.9)
P 		18
B 78.5
(3)
P 		52
(-1.5)
P 		42.9
(-3)
P 		78.2
(2.9)
P 		36
C 62.2
(-0.8)
P 		71.5
(3)
P 		63.1
(-0.4)
P 		56.7
(-3)
P 		15
avr 69.7
(3) 		59.6
(-0.5) 		52.2
(-3) 		61.9
(0.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 46.3
(-3)
P 		108.3
(3)
P 		58.9
(-1.8)
P 		65.7
(-1.1)
P 		48.6
(-2.8)
P 		61.3
(-1.5)
P 		62
B 76.7
(2.4)
P 		78.9
(2.9)
P 		79.5
(3)
P 		60
(-1.5)
P 		68.7
(0.5)
P 		53.5
(-3)
P 		26
C 85.5
(2.2)
P 		91.8
(3)
P 		72.6
(0.5)
P 		45.3
(-3)
P 		54.5
(-1.8)
P 		48.9
(-2.5)
P 		47
avr 69.5
(-0.7) 		93
(3) 		70.3
(-0.5) 		57
(-2.6) 		57.3
(-2.6) 		54.6
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4627
Sequence Type Exemplar sequence
Representative Public ID ZC239.6 NCBI
Target Description ZC239.6 /REP_DB=WormBase Gene ID /WP=CE15122 /TR=P91556 /GB=AAB37945.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062073 NCBI Caenorhabditis elegans ZC239.6 (ZC239.6) mRNA, complete cds. 11/11 None
SNAP00000024293 ENSEMBL cdna:SNAP chromosome:CEL140:II:3209659:3210587:1 10/11 None
GENEFINDER00000024310 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3209659:3210587:1 11/11 None
ZC239.6.3 ENSEMBL cdna:known chromosome:CEL140:II:3209473:3211371:1 gene:ZC239.6 11/11 None
ZC239.6.1 ENSEMBL cdna:known chromosome:CEL140:II:3209626:3211371:1 gene:ZC239.6 11/11 None
ZC239.6.2 ENSEMBL cdna:known chromosome:CEL140:II:3209652:3211371:1 gene:ZC239.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061918 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023626 2/11 Cross Hyb Matching Probes None
F22E5.13 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3209657-3210549(+) 86.25 86.25
Public Domain and Genome References
Gene Title
Ensembl ZC239.6
Entrez Gene 173663 Entrez gene
SwissProt P91556 EMBL-EBI
WormBase CE32765 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37945 Hypothetical protein ZC239.6 [Caenorhabditis elegans] ref|NP_494474.2| ZC239.6 [Caenorhabditis elegans] 1.0E-146
blast AAB37945 Hypothetical protein ZC239.6 [Caenorhabditis elegans] ref|NP_494474.2| ZC239.6 [Caenorhabditis elegans] 1.0E-126
blast AAB66106 Hypothetical protein K02F6.8 [Caenorhabditis elegans] ref|NP_494291.1| K02F6.8 [Caenorhabditis elegans] 1.0E-35
blast AAB66105 Hypothetical protein K02F6.5 [Caenorhabditis elegans] ref|NP_494292.2| K02F6.5 [Caenorhabditis elegans] 1.0E-34
blast NP_494319 F22E5.13 [Caenorhabditis elegans] gb|AAB66181.2| Hypothetical protein F22E5.13 [Caenorhabditis elegans] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 8.5E-40
Sequence
Target Sequence 
>C. ELEGANS:181814_AT
gagcggatccgttgtcagatatcatttgcaactgtagatctacttcaaataatgttgctc
cagccgtcgtgaattctgaaataaagcctccaaataaagagaatgacctatcaattgcct
cagtgccggagtacgatgctaaccaaaacattgtcaaaaatagcgagaagatgatgttgg
aaatcgaaaaaatcccgtcacccccaaaagatgccaaaatcgaaaattacgacgattatt
tgaaactggtgttctccaatatcatcgatgcagctcgggataaaatctccaattgggatt
ttaaaaaagccggcgaggcacttcaatttgcacaccgaggcatcagagggaccctctcgt
ttctgactgattctagaagactttgtggcgtggcagcttcatcgtttgccgaattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGGATCCGTTGTCAGATATCAT 180 387 323 Antisense
GCTCCAGCCGTCGTGAATTCTGAAA 66 299 379 Antisense
AATGACCTATCAATTGCCTCAGTGC 14 165 424 Antisense
GCCTCAGTGCCGGAGTACGATGCTA 402 281 439 Antisense
GTCACCCCCAAAAGATGCCAAAATC 302 459 519 Antisense
GAAACTGGTGTTCTCCAATATCATC 410 357 564 Antisense
GGCGAGGCACTTCAATTTGCACACC 184 541 634 Antisense
GCACACCGAGGCATCAGAGGGACCC 265 315 652 Antisense
CCTCTCGTTTCTGACTGATTCTAGA 545 267 675 Antisense
AGAAGACTTTGTGGCGTGGCAGCTT 169 75 697 Antisense
GCAGCTTCATCGTTTGCCGAATTGC 259 313 715 Antisense
Sequence Source Affymetrix Proprietary Database