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[181813_s_at]

Description Y54G9A.5 /REP_DB=WormBase Gene ID /WP=CE20321 /TR=Q9XWG8 /GB=CAA21700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 42.2
(-1.6)
A 		14.3
(-3)
A 		37.6
(-1.8)
A 		131.7
(3)
P 		117
B 12.7
(-2.8)
A 		10.5
(-2.9)
A 		7.8
(-3)
A 		145.3
(3)
P 		138
C 2.6
(-3)
A 		8
(-2.9)
A 		38
(-2)
P 		221
(3)
P 		218
avr 19.2
(-2.7) 		10.9
(-3) 		27.8
(-2.3) 		166
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 831
1 2 3 4 5 6 range
A 23.1
(-2.8)
A 		5
(-3)
A 		45.8
(-2.5)
P 		96.9
(-2)
P 		247.2
(-0.3)
P 		543.7
(3)
P 		539
B 7.4
(-3)
A 		6.6
(-3)
A 		51
(-2.7)
A 		77.7
(-2.4)
P 		414.7
(0.2)
P 		770.5
(3)
P 		764
C 7.5
(-3)
A 		3.2
(-3)
A 		37
(-2.8)
A 		81.5
(-2.4)
P 		386.6
(-0.2)
P 		833.8
(3)
P 		831
avr 12.7
(-2.9) 		4.9
(-3) 		44.6
(-2.7) 		85.4
(-2.3) 		349.5
(-0.1) 		716
(3) 		711
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 15.4
(1.6)
A 		3.1
(-3)
A 		9.8
(-0.5)
A 		19.3
(3)
P 		16
B 4.1
(-2.5)
A 		2.6
(-2.8)
A 		1.8
(-3)
A 		31
(3)
P 		29
C 0.9
(-3)
A 		2.3
(-2.8)
A 		13.2
(-1)
P 		37.3
(3)
P 		36
avr 6.8
(-2.1) 		2.7
(-3) 		8.3
(-1.7) 		29.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 4.3
(-2.9)
A 		1.8
(-3)
A 		10
(-2.6)
P 		24.6
(-2)
P 		74.6
(0.3)
P 		132.4
(3)
P 		131
B 2.6
(-3)
A 		2.2
(-3)
A 		12.4
(-2.8)
A 		20.6
(-2.6)
P 		168.5
(0.5)
P 		287.3
(3)
P 		285
C 2.8
(-3)
A 		1
(-3)
A 		9.4
(-2.8)
A 		16.4
(-2.7)
P 		125.1
(-0.3)
P 		279.1
(3)
P 		278
avr 3.2
(-3) 		1.7
(-3) 		10.6
(-2.8) 		20.5
(-2.5) 		122.7
(0.1) 		232.9
(3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181813_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2924
Sequence Type Exemplar sequence
Representative Public ID Y54G9A.5 NCBI
Target Description Y54G9A.5 /REP_DB=WormBase Gene ID /WP=CE20321 /TR=Q9XWG8 /GB=CAA21700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064476 NCBI Caenorhabditis elegans Y54G9A.5 (Y54G9A.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000011614 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13722971:13724833:1 11/11 None
Y54G9A.5 ENSEMBL cdna:known chromosome:CEL140:II:13722860:13724905:1 gene:Y54G9A.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13722856-13724830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G9A.5
Entrez Gene 175016 Entrez gene
SwissProt Q9XWG8 EMBL-EBI
WormBase CE20321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21700 Hypothetical protein Y54G9A.5 [Caenorhabditis elegans] ref|NP_496877.1| Y54G9A.5 [Caenorhabditis elegans] 1.0E-138
blast CAA21700 Hypothetical protein Y54G9A.5 [Caenorhabditis elegans] ref|NP_496877.1| Y54G9A.5 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496877.1 3 40-59,87-109,176-195
Y54G9A.5 3 40-59,87-109,176-195
Sequence
Target Sequence 
>C. ELEGANS:181813_S_AT
ttttctgtgcgatttggatcgcccgaaatcgtcgaaccactacgaacgagagacgaagat
cctgatcaattgcgccttcggattatcgatttttatgattgctttaaactggtacatcaa
atgcacccgcgccgtgcccgtccatccatcggacattctcaatttgacgggaaaatcgca
gagcaaatacgagtcggacagcttcgagagcatcaccttcagcagcacaaagtcgcggtc
gaaaatctcgaatttgaatcgctcgacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTGTGCGATTTGGATCGCCCG 272 677 480 Antisense
TGGATCGCCCGAAATCGTCGAACCA 339 549 494 Antisense
GAAGATCCTGATCAATTGCGCCTTC 589 337 534 Antisense
TGATCAATTGCGCCTTCGGATTATC 174 565 542 Antisense
ATCGCAGAGCAAATACGAGTCGGAC 463 37 654 Antisense
ATACGAGTCGGACAGCTTCGAGAGC 620 23 666 Antisense
TCGGACAGCTTCGAGAGCATCACCT 145 607 673 Antisense
ACCTTCAGCAGCACAAAGTCGCGGT 251 81 694 Antisense
CAGCAGCACAAAGTCGCGGTCGAAA 202 203 699 Antisense
AAGTCGCGGTCGAAAATCTCGAATT 434 157 709 Antisense
ATCTCGAATTTGAATCGCTCGACCT 302 33 724 Antisense
Sequence Source Affymetrix Proprietary Database