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[181812_at]

Description Y54G9A.5 /REP_DB=WormBase Gene ID /WP=CE20321 /TR=Q9XWG8 /GB=CAA21700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 3.2
(-3)
A 		3.4
(-3)
A 		2.9
(-3)
A 		67.9
(3)
A 		65
B 2.3
(-3)
A 		4.6
(-2.8)
A 		4
(-2.9)
A 		80.6
(3)
A 		78
C 4.7
(-2.9)
A 		2.5
(-3)
A 		36.2
(-1.2)
A 		118
(3)
A 		116
avr 3.4
(-3) 		3.5
(-3) 		14.4
(-2.2) 		88.8
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 4
(-3)
A 		6.5
(-2.9)
A 		16
(-2.7)
A 		49.9
(-2)
A 		158.2
(0.5)
A 		266.6
(3)
M 		263
B 4.4
(-3)
A 		2.7
(-3)
A 		7.2
(-2.9)
A 		60.9
(-1.9)
A 		246.5
(1.5)
A 		326.3
(3)
P 		324
C 2.5
(-3)
A 		2.2
(-3)
A 		7.9
(-2.9)
A 		3.9
(-3)
A 		231.3
(1.7)
A 		295.8
(3)
P 		294
avr 3.6
(-3) 		3.8
(-3) 		10.4
(-2.9) 		38.2
(-2.3) 		212
(1.3) 		296.2
(3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.2
(-2.7)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		9.9
(3)
A 		9
B 0.7
(-3)
A 		1.1
(-2.9)
A 		0.9
(-2.9)
A 		17.2
(3)
A 		17
C 1.6
(-2.7)
A 		0.7
(-3)
A 		12.6
(0.7)
A 		19.9
(3)
A 		19
avr 1.2
(-2.8) 		0.8
(-3) 		4.8
(-1.4) 		15.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.3
(-2.9)
A 		3.5
(-2.7)
A 		12.6
(-1.9)
A 		47.7
(1.4)
A 		64.9
(3)
M 		64
B 1.5
(-3)
A 		0.9
(-3)
A 		1.8
(-3)
A 		16.1
(-2.2)
A 		100.1
(1.9)
A 		121.7
(3)
P 		121
C 0.9
(-3)
A 		0.7
(-3)
A 		2
(-2.9)
A 		0.8
(-3)
A 		74.8
(1.5)
A 		99
(3)
P 		98
avr 1
(-3) 		1.3
(-3) 		2.4
(-2.9) 		9.8
(-2.4) 		74.2
(1.7) 		95.2
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2924
Sequence Type Exemplar sequence
Representative Public ID Y54G9A.5 NCBI
Target Description Y54G9A.5 /REP_DB=WormBase Gene ID /WP=CE20321 /TR=Q9XWG8 /GB=CAA21700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064476 NCBI Caenorhabditis elegans Y54G9A.5 (Y54G9A.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000011614 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13722971:13724833:1 11/11 None
Y54G9A.5 ENSEMBL cdna:known chromosome:CEL140:II:13722860:13724905:1 gene:Y54G9A.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011606 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13722856-13724830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G9A.5
Entrez Gene 175016 Entrez gene
SwissProt Q9XWG8 EMBL-EBI
WormBase CE20321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21700 Hypothetical protein Y54G9A.5 [Caenorhabditis elegans] ref|NP_496877.1| Y54G9A.5 [Caenorhabditis elegans] 1.0E-138
blast CAA21700 Hypothetical protein Y54G9A.5 [Caenorhabditis elegans] ref|NP_496877.1| Y54G9A.5 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496877.1 3 40-59,87-109,176-195
Y54G9A.5 3 40-59,87-109,176-195
Sequence
Target Sequence 
>C. ELEGANS:181812_AT
ccgacaagctgcgcgacgaatttcgcagactggccatttcaagattagactacatgctga
aacaaggatcaccgaacgattctcttctctccatggcattcattgtgacgaattgtagcg
tagcagccgccagctcgacagcatcctcaaaaatcgaccgaaaaaatggacagacaattc
tggaggaagaaacgtgtggaagcgccgaaattcacggctggtgtgaccaaaagcccggcc
gaatcgggattttgacggcgagaagtgaaaatcgcacggctttggcgcattttctgtgcg
atttggatcgcccgaaatcgtcgaaccactacgaacgagagacgaagatcctgatcaatt
gcgccttcggattatcgatttttatgattgctttaaactggtacatcaaatgcacccgcg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGACAAGCTGCGCGACGAATTTCG 379 261 191 Antisense
TTTCGCAGACTGGCCATTTCAAGAT 217 669 211 Antisense
AAGGATCACCGAACGATTCTCTTCT 257 161 254 Antisense
CTTCTCTCCATGGCATTCATTGTGA 79 221 274 Antisense
GAATTGTAGCGTAGCAGCCGCCAGC 502 323 300 Antisense
GACAGCATCCTCAAAAATCGACCGA 168 369 327 Antisense
GAAGCGCCGAAATTCACGGCTGGTG 82 345 389 Antisense
GGCTGGTGTGACCAAAAGCCCGGCC 413 539 406 Antisense
GAAAATCGCACGGCTTTGGCGCATT 15 355 457 Antisense
AATCGTCGAACCACTACGAACGAGA 301 169 506 Antisense
ACTGGTACATCAAATGCACCCGCGC 248 97 587 Antisense
Sequence Source Affymetrix Proprietary Database