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[181810_at]

Description C56E6.4 /REP_DB=WormBase Gene ID /WP=CE04276 /TR=Q18899 /GB=AAA81091.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 8.2
(-2.6)
A 		3.1
(-3)
A 		6.2
(-2.7)
A 		72.9
(3)
A 		70
B 34.1
(-0.4)
A 		59.5
(3)
A 		15.2
(-3)
A 		26.8
(-1.4)
A 		44
C 7.2
(-2.8)
A 		59.3
(3)
A 		5.8
(-3)
A 		11.7
(-2.3)
A 		54
avr 16.5
(-1.6) 		40.6
(3) 		9.1
(-3) 		37.1
(2.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 47.6
(3)
A 		12.6
(-1.7)
A 		2.6
(-3)
A 		46
(2.8)
A 		11.5
(-1.8)
A 		6.7
(-2.5)
A 		45
B 26.4
(1.6)
A 		32.4
(3)
A 		11.7
(-1.7)
A 		17.5
(-0.4)
A 		5.9
(-3)
A 		5.9
(-3)
A 		27
C 33.8
(3)
A 		7.9
(-2.5)
A 		8.1
(-2.4)
A 		10.2
(-2)
A 		32.9
(2.8)
A 		5.5
(-3)
A 		28
avr 35.9
(3) 		17.6
(-0.7) 		7.5
(-2.7) 		24.6
(0.7) 		16.8
(-0.8) 		6
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3
(-1.6)
A 		0.7
(-3)
A 		1.6
(-2.5)
A 		10.7
(3)
A 		10
B 10.9
(1)
A 		14.7
(3)
A 		3.5
(-3)
A 		5.7
(-1.8)
A 		11
C 2.4
(-2.8)
A 		17
(3)
A 		2
(-3)
A 		2
(-3)
A 		15
avr 5.4
(-0.9) 		10.8
(3) 		2.4
(-3) 		6.1
(-0.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.8
(1.4)
A 		4.5
(-0.9)
A 		0.6
(-3)
A 		11.7
(3)
A 		3.5
(-1.4)
A 		1.6
(-2.5)
A 		11
B 9.2
(1.9)
A 		10.8
(3)
A 		2.9
(-2.5)
A 		4.6
(-1.3)
A 		2.4
(-2.9)
A 		2.2
(-3)
A 		9
C 12.5
(3)
A 		2.4
(-2.7)
A 		2.1
(-2.9)
A 		2.1
(-2.9)
A 		10.6
(1.9)
A 		1.9
(-3)
A 		11
avr 10.2
(3) 		5.9
(-0.1) 		1.9
(-3) 		6.1
(0) 		5.5
(-0.4) 		1.9
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5553
Sequence Type Exemplar sequence
Representative Public ID C56E6.4 NCBI
Target Description C56E6.4 /REP_DB=WormBase Gene ID /WP=CE04276 /TR=Q18899 /GB=AAA81091.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062918 NCBI Caenorhabditis elegans C56E6.4 (C56E6.4) mRNA, complete cds. 11/11 None
C56E6.4 ENSEMBL cdna:known chromosome:CEL140:II:6527181:6528520:-1 gene:C56E6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033859 8/11 Cross Hyb Matching Probes None
GENEFINDER00000033868 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6527177-6528517(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56E6.4
Entrez Gene 183861 Entrez gene
SwissProt Q18899 EMBL-EBI
WormBase CE04276 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81091 Hypothetical protein C56E6.4 [Caenorhabditis elegans] ref|NP_495319.1| C56E6.4 [Caenorhabditis elegans] 1.0E-121
blast CAE59339 Hypothetical protein CBG02684 [Caenorhabditis briggsae] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR003533 EMBL-EBI Doublecortin 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:181810_AT
ggaggcaatggcagtcaccaagattggaacaattgctagaagatgttggaccgtatgttg
gaatggatgatggtgcatctgctatttatacgttagagggagaagaaatcacggatccag
atgaaatcgtagacttgggaacatactatgtctctggagatgaatcacttatgcttccag
acgccaatgatcgtcgtcgctcaagtgatcctgatctccagaatattatacatctaactc
tgttagatcaacttatccggctaattgtagtgactgttccaccaacacctccacctcgac
cgtatacttctgtacagaatacctcgaggacaaagaaagtgacaacaaaagcgagagaag
tcgatatgtcacaatatgattcatattatgatgatgctctgcaagacatagaagagctgc
atatgagccaaaaaactttgacacgacgatggatttctttgaagggatcccacattccat
caaaaaaccttgaagttttccctctcaactatgatattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCAATGGCAGTCACCAAGATT 210 515 92 Antisense
TGGTGCATCTGCTATTTATACGTTA 391 553 162 Antisense
GAACATACTATGTCTCTGGAGATGA 498 351 230 Antisense
TTATGCTTCCAGACGCCAATGATCG 87 679 260 Antisense
CAATGATCGTCGTCGCTCAAGTGAT 345 181 276 Antisense
GCTCAAGTGATCCTGATCTCCAGAA 282 301 290 Antisense
CTCTGTTAGATCAACTTATCCGGCT 469 231 329 Antisense
TTGTAGTGACTGTTCCACCAACACC 22 707 356 Antisense
CCTCGACCGTATACTTCTGTACAGA 592 265 385 Antisense
TTGAAGGGATCCCACATTCCATCAA 10 705 550 Antisense
GTTTTCCCTCTCAACTATGATATTT 183 449 586 Antisense
Sequence Source Affymetrix Proprietary Database