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[181809_at]

Description C41H7.2 /REP_DB=WormBase Gene ID /WP=CE08673 /TR=O17153 /GB=AAB70935.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 17.7
(-1.1)
A 		3.2
(-3)
A 		11.8
(-1.9)
A 		50
(3)
A 		47
B 5.1
(-2.5)
A 		8.8
(-1.4)
A 		3.5
(-3)
A 		23.1
(3)
A 		20
C 3.3
(-3)
A 		15.6
(-2.1)
A 		7.8
(-2.7)
A 		87.5
(3)
A 		84
avr 8.7
(-2.9) 		9.2
(-2.8) 		7.7
(-3) 		53.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15.9
(-0.3)
A 		3.7
(-2.6)
A 		33.5
(3)
A 		32.8
(2.9)
A 		1.6
(-3)
A 		5.7
(-2.2)
A 		32
B 9.5
(3)
A 		4.6
(-1.1)
A 		2.3
(-3)
A 		3.9
(-1.7)
A 		3.8
(-1.8)
A 		5.3
(-0.5)
A 		7
C 11.4
(-1)
A 		3.7
(-2.7)
A 		29.5
(3)
A 		2.5
(-3)
A 		18.2
(0.5)
A 		5.8
(-2.3)
A 		27
avr 12.3
(-0.2) 		4
(-3) 		21.8
(3) 		13.1
(0.1) 		7.9
(-1.7) 		5.6
(-2.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.5
(2.3)
A 		0.7
(-3)
A 		3.1
(-0.8)
A 		7.3
(3)
A 		7
B 1.6
(-1.8)
A 		2.2
(-1)
A 		0.8
(-3)
A 		4.9
(3)
A 		4
C 1.1
(-3)
A 		4.5
(-1.5)
A 		2.7
(-2.3)
A 		14.8
(3)
A 		14
avr 3.1
(-2.2) 		2.5
(-2.7) 		2.2
(-3) 		9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.9
(-1.2)
A 		1.3
(-2.4)
A 		7.3
(2.2)
A 		8.3
(3)
A 		0.5
(-3)
A 		1.4
(-2.3)
A 		8
B 3.3
(3)
A 		1.5
(-1)
A 		0.6
(-3)
A 		1
(-2.1)
A 		1.6
(-0.8)
A 		2
(0.1)
A 		3
C 4.2
(0.2)
A 		1.1
(-2.5)
A 		7.5
(3)
A 		0.5
(-3)
A 		5.9
(1.6)
A 		2
(-1.7)
A 		7
avr 3.5
(0.5) 		1.3
(-3) 		5.1
(3) 		3.3
(0.2) 		2.7
(-0.8) 		1.8
(-2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5904
Sequence Type Exemplar sequence
Representative Public ID C41H7.2 NCBI
Target Description C41H7.2 /REP_DB=WormBase Gene ID /WP=CE08673 /TR=O17153 /GB=AAB70935.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062023(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062023 NCBI Caenorhabditis elegans C41H7.2 (C41H7.2) mRNA, complete cds. 10/11 None
C41H7.2 ENSEMBL cdna:known chromosome:CEL140:II:3014800:3015956:1 gene:C41H7.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027512 8/11 Cross Hyb Matching Probes None
GENEFINDER00000027513 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3008712-3015955(+) 96.8 100.0
Public Domain and Genome References
Gene Title
Ensembl C41H7.2
Entrez Gene 183395 Entrez gene
SwissProt O17153 EMBL-EBI
WormBase CE32162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63434 Hypothetical protein C41H7.2 [Caenorhabditis elegans] ref|NP_494424.2| C41H7.2 [Caenorhabditis elegans] 2.0E-73
blast T32324 hypothetical protein C41H7.2 - Caenorhabditis elegans 3.0E-58
Sequence
Target Sequence 
>C. ELEGANS:181809_AT
atgtcccaagagcagctcgcggagcaatcccgacgagaatttcaatatcaaatgcagatg
ctccagcagcgcgtcttgcagcaagggcaggcttggccaatgccgggagctcagcagctc
caacaaatgctcctggctcagcaattcatgatgcagcagtttcgggctcagtttcattta
aatttccccaacttacccaatttccccaatttctcgaatcgcttcaaatgaaaacttcag
tccaaactttaaaaatttttattattattttttgcaacactagaaaagttgggaaatatt
cagatttttgcgtcgttttgaaaatttccaaagatttcttccttactggagcttttaaaa
tttctcaatttcaaaaaaaatttccagcaactccccgcatccttccaactcgatccagct
gctccacagcttgtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCCAAGAGCAGCTCGCGGAGC 92 49 1409 Antisense
GGAGCAATCCCGACGAGAATTTCAA 178 519 1429 Antisense
CAAATGCAGATGCTCCAGCAGCGCG 582 193 1457 Antisense
GCAGCGCGTCTTGCAGCAAGGGCAG 365 313 1474 Antisense
GCAAGGGCAGGCTTGGCCAATGCCG 709 319 1489 Antisense
TGCCGGGAGCTCAGCAGCTCCAACA 2 587 1509 Antisense
CTCCAACAAATGCTCCTGGCTCAGC 393 235 1526 Antisense
ATGCAGCAGTTTCGGGCTCAGTTTC 288 43 1559 Antisense
TCCCCAATTTCTCGAATCGCTTCAA 316 597 1611 Antisense
AAGATTTCTTCCTTACTGGAGCTTT 431 153 1739 Antisense
TCCAGCTGCTCCACAGCTTGTCAAA 614 589 1822 Antisense
Sequence Source Affymetrix Proprietary Database