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[181808_at]

Description F17A2.12 /REP_DB=WormBase Gene ID /WP=CE03221 /TR=Q19509 /GB=CAA92156.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 19      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 9.7
(-2.4)
A 		40.7
(3)
A 		6.1
(-3)
A 		35.5
(2.1)
A 		35
B 39
(2.7)
A 		36.4
(2.1)
A 		14.7
(-3)
A 		40.1
(3)
A 		25
C 40.4
(-2.3)
A 		44.2
(-2.1)
A 		30.5
(-3)
A 		119.9
(3)
A 		89
avr 29.7
(-1.4) 		40.4
(-0.1) 		17.1
(-3) 		65.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 17.5
(1.7)
A 		9.1
(-0.9)
A 		21.8
(3)
A 		15.7
(1.1)
A 		5.7
(-1.9)
A 		2.1
(-3)
A 		20
B 15.7
(-1.5)
A 		23.8
(0.8)
A 		31.7
(3)
A 		10.2
(-3)
A 		15.4
(-1.5)
A 		26.2
(1.5)
A 		22
C 2.5
(-3)
A 		59.9
(1.9)
A 		24.5
(-1.1)
A 		72.9
(3)
A 		4.1
(-2.9)
A 		20.2
(-1.5)
A 		70
avr 11.9
(-2.1) 		30.9
(2.5) 		26
(1.3) 		32.9
(3) 		8.4
(-3) 		16.2
(-1.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3.5
(-1.4)
A 		8.8
(3)
A 		1.6
(-3)
A 		5.2
(0)
A 		7
B 12.4
(3)
A 		9
(0.7)
A 		3.4
(-3)
A 		8.5
(0.4)
A 		9
C 13.4
(-1.3)
A 		12.7
(-1.7)
A 		10.6
(-3)
A 		20.2
(3)
A 		10
avr 9.8
(1.5) 		10.2
(1.9) 		5.2
(-3) 		11.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.2
(0.9)
A 		3.2
(0.9)
A 		4.7
(3)
A 		4
(2)
A 		1.7
(-1.3)
A 		0.5
(-3)
A 		4
B 5.5
(-0.6)
A 		7.9
(1.4)
A 		7.7
(1.2)
A 		2.7
(-3)
A 		6.3
(0)
A 		9.8
(3)
A 		7
C 0.9
(-3)
A 		18.3
(3)
A 		6.2
(-1.2)
A 		14.7
(1.8)
A 		1.3
(-2.9)
A 		6.8
(-1)
A 		17
avr 3.2
(-2.9) 		9.8
(3) 		6.2
(-0.2) 		7.1
(0.6) 		3.1
(-3) 		5.7
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16643
Sequence Type Exemplar sequence
Representative Public ID F17A2.12 NCBI
Target Description F17A2.12 /REP_DB=WormBase Gene ID /WP=CE03221 /TR=Q19509 /GB=CAA92156.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077661 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-40) (srd-40) mRNA, complete cds. 11/11 None
F17A2.12 ENSEMBL cdna:known chromosome:CEL140:X:12323660:12325353:1 gene:F17A2.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014136 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12323659-12325353(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-40
Ensembl F17A2.12
Entrez Gene 184608 Entrez gene
SwissProt Q19509 EMBL-EBI
WormBase CE03221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92156 Hypothetical protein F17A2.12 [Caenorhabditis elegans] ref|NP_510062.1| Serpentine Receptor, class D (delta) family member (srd-40) [Caenorhabditis elegans] sp|Q19509|SRD40_CAEEL Serpentine receptor class delta-40 (Protein srd-40) 1.0E-179
blast CAE61422 Hypothetical protein CBG05290 [Caenorhabditis briggsae] 1.0E-126
blast CAA92159 Hypothetical protein F17A2.6 [Caenorhabditis elegans] ref|NP_510063.1| Serpentine Receptor, class D (delta) family member (srd-41) [Caenorhabditis elegans] sp|O17821|SRD41_CAEEL Serpentine receptor class delta-41 (Protein srd-41) 4.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510062.1 7 10-32,45-67,95-117,130-152,187-209,235-257,272-294
F17A2.12 7 10-32,45-67,95-117,130-152,187-209,235-257,272-294
Sequence
Target Sequence 
>C. ELEGANS:181808_AT
attattttactctttcacatgccaataatagcatcaatggttatggaagtgataatggtg
ataaatcagtcgttgccaaatgaaatcagagaacagtacaagtttctcaatgcaaacgcc
gaagagtactcaatcgttggagcgcttagcctgaaaacagtaccaagtctaataaatttt
ctgttaatttctggatctgtagtagcctctccgttcattagcttcttttttcgagagaaa
attttacgacgtatcaattcacagttttatcaacattcgaaatggaaaaagtctcaaatt
caagtttttgtgaaaggacttacaattcaagcatttcttccgctcatattttatgtgcca
gtatttggtctctacttctattgcattttaactcatacagaaatactatttcaacaatat
tttatgacagtggtcccttgcttgccagctttttttgatccaatgctgactttgtatttt
gtgacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATTTTACTCTTTCACATGCCAA 35 15 409 Antisense
TCAATCGTTGGAGCGCTTAGCCTGA 265 633 538 Antisense
TTCTGGATCTGTAGTAGCCTCTCCG 514 693 597 Antisense
TCCGTTCATTAGCTTCTTTTTTCGA 239 595 618 Antisense
TACGACGTATCAATTCACAGTTTTA 12 649 653 Antisense
AATTCAAGCATTTCTTCCGCTCATA 72 177 732 Antisense
ATGTGCCAGTATTTGGTCTCTACTT 550 49 761 Antisense
GGTCTCTACTTCTATTGCATTTTAA 388 503 775 Antisense
TTTATGACAGTGGTCCCTTGCTTGC 188 671 829 Antisense
TGCCAGCTTTTTTTGATCCAATGCT 224 587 851 Antisense
ATGCTGACTTTGTATTTTGTGACGC 172 43 871 Antisense
Sequence Source Affymetrix Proprietary Database