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[181807_at]

Description ZC328.4 /REP_DB=WormBase Gene ID /WP=CE15187 /TR=O02053 /GB=AAK39378.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 51      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 272.1
(-1.5)
P 		361.5
(3)
P 		301.8
(0)
P 		241.6
(-3)
P 		120
B 296
(0.2)
P 		383.9
(3)
P 		228.9
(-1.9)
P 		192.5
(-3)
P 		191
C 253.5
(-1.7)
P 		337.7
(3)
P 		297.7
(0.8)
P 		230
(-3)
P 		108
avr 273.9
(-0.7) 		361
(3) 		276.1
(-0.6) 		221.4
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 669
1 2 3 4 5 6 range
A 258.1
(-2.7)
P 		291
(-2.4)
P 		233.2
(-3)
P 		555.3
(0.3)
P 		453
(-0.7)
P 		812.4
(3)
P 		579
B 231
(-2.8)
P 		279.2
(-2.4)
P 		211.1
(-3)
P 		337.8
(-1.9)
P 		573.7
(0.3)
P 		880.2
(3)
P 		669
C 221.1
(-3)
P 		273.2
(-2.5)
P 		359
(-1.6)
P 		390.2
(-1.2)
P 		544.3
(0.3)
P 		800.1
(3)
P 		579
avr 236.7
(-3) 		281.1
(-2.6) 		267.8
(-2.7) 		427.8
(-1.1) 		523.7
(-0.1) 		830.9
(3) 		594
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 99.1
(3)
P 		78.5
(1.1)
P 		78.9
(1.1)
P 		35.4
(-3)
P 		64
B 94.4
(3)
P 		94.8
(3)
P 		53
(-1.7)
P 		41
(-3)
P 		54
C 83.9
(1.2)
P 		97.1
(2.4)
P 		103.7
(3)
P 		38.8
(-3)
P 		65
avr 92.5
(3) 		90.1
(2.7) 		78.5
(1.4) 		38.4
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 47.6
(-3)
P 		103.5
(-0.8)
P 		50.8
(-2.9)
P 		140.8
(0.7)
P 		136.7
(0.6)
P 		197.8
(3)
P 		150
B 80.4
(-2.4)
P 		92.9
(-2.1)
P 		51.3
(-3)
P 		89.5
(-2.2)
P 		233.1
(0.9)
P 		328.2
(3)
P 		277
C 82
(-2.9)
P 		83.4
(-2.8)
P 		91.4
(-2.6)
P 		78.5
(-3)
P 		176.1
(0.1)
P 		267.9
(3)
P 		189
avr 70
(-2.8) 		93.3
(-2.1) 		64.5
(-3) 		102.9
(-1.8) 		182
(0.5) 		264.6
(3) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1263
Sequence Type Exemplar sequence
Representative Public ID ZC328.4 NCBI
Target Description ZC328.4 /REP_DB=WormBase Gene ID /WP=CE15187 /TR=O02053 /GB=AAK39378.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059445 NCBI Caenorhabditis elegans Suspended ANimation (anoxia-induced) defective family member (san-1) (san-1) mRNA, complete cds. 11/11 None
SNAP00000023532 ENSEMBL cdna:SNAP chromosome:CEL140:I:6415669:6417186:1 11/11 None
GENEFINDER00000023538 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6415669:6417186:1 11/11 None
ZC328.4 ENSEMBL cdna:known chromosome:CEL140:I:6415669:6417347:1 gene:ZC328.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6415597-6417115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol san-1
Ensembl ZC328.4
Entrez Gene 172342 Entrez gene
SwissProt O02053 EMBL-EBI
WormBase CE34445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39378 Suspended animation (anoxia-induced) defective protein 1 [Caenorhabditis elegans] ref|NP_491846.2| Suspended ANimation (anoxia-induced) defective family member (san-1) [Caenorhabditis elegans] 0.0
blast CAE67181 Hypothetical protein CBG12617 [Caenorhabditis briggsae] 1.0E-167
blast CAE67181 Hypothetical protein CBG12617 [Caenorhabditis briggsae] 1.0E-164
Sequence
Target Sequence 
>C. ELEGANS:181807_AT
tgcgcagttccaatacaaatcgtcaatgatgccgaagatgctctagaaatgagagaaatg
cgaagacatctacaggaaagagactctgatgatgatgaggaagaggaagaaacgagaaaa
gcattcactaatttaccagtgattggtgataatcatacagttccgattgttcgtttgcca
tcgatgtgctcagatacaacgaagaaagcgatgaagtttgatacgggaaacgtggaaagg
gttaacccagtttgtaaggataatcaaatgcaaccatttgaggttctctcctacactgat
gcggatgacgtggaatatttgagaaacgttcatgagcttcatgctcacatcgaaagatat
gccatcaaggaaacaactaatccgagtatcacgggatcatctacttctgaagctgcagct
gttactatttatccagtttccagttcagagttcgaagtttggactgttgaaggatctgga
ccgacaaaagcaaaggctagaatggctattaagcgtgttttcaaggatttgtcgtttgag
gaatatgccgcgtctcttctgccgaatcacccttcgatggtgcgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGCAGTTCCAATACAAATCGTCA 4 585 604 Antisense
TACAGTTCCGATTGTTCGTTTGCCA 700 643 759 Antisense
TTGTTCGTTTGCCATCGATGTGCTC 310 707 770 Antisense
GCAACCATTTGAGGTTCTCTCCTAC 252 321 873 Antisense
TTCTCTCCTACACTGATGCGGATGA 101 687 887 Antisense
GAGCTTCATGCTCACATCGAAAGAT 262 387 937 Antisense
GTATCACGGGATCATCTACTTCTGA 587 453 989 Antisense
CTACTTCTGAAGCTGCAGCTGTTAC 115 227 1004 Antisense
ATCCAGTTTCCAGTTCAGAGTTCGA 53 37 1034 Antisense
TTTGAGGAATATGCCGCGTCTCTTC 632 667 1138 Antisense
GAATCACCCTTCGATGGTGCGTGCA 178 327 1167 Antisense
Sequence Source Affymetrix Proprietary Database