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[181806_at]

Description C26D10.5 /REP_DB=WormBase Gene ID /WP=CE03028 /TR=Q18215 /GB=CAA91123.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 14      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 176.1
(1.8)
P 		135.2
(-1.7)
P 		190.4
(3)
P 		120.1
(-3)
P 		70
B 189.4
(1.6)
P 		152.2
(-0.2)
P 		218.3
(3)
P 		93.7
(-3)
P 		125
C 198
(1.5)
P 		179.4
(0.2)
P 		220.3
(3)
P 		133.2
(-3)
P 		87
avr 187.8
(1.6) 		155.6
(-0.5) 		209.7
(3) 		115.7
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 246
(3)
P 		246
(3)
P 		188.3
(0.5)
P 		204.8
(1.2)
P 		144.3
(-1.4)
P 		108.7
(-3)
P 		137
B 297.6
(3)
P 		256.2
(1.6)
P 		195
(-0.5)
P 		194.1
(-0.5)
P 		143.2
(-2.2)
P 		121
(-3)
P 		177
C 305.9
(3)
P 		262.1
(1.7)
P 		174.8
(-1)
P 		237.6
(0.9)
P 		128.2
(-2.4)
P 		107.8
(-3)
P 		198
avr 283.2
(3) 		254.8
(2) 		186
(-0.4) 		212.2
(0.5) 		138.6
(-2.1) 		112.5
(-3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 64.1
(3)
P 		29.4
(-1.5)
P 		49.8
(1.2)
P 		17.6
(-3)
P 		47
B 60.4
(3)
P 		37.6
(-0.4)
P 		50.6
(1.5)
P 		20
(-3)
P 		40
C 65.5
(1.8)
P 		51.6
(0.2)
P 		76.8
(3)
P 		22.5
(-3)
P 		54
avr 63.3
(3) 		39.5
(-0.3) 		59.1
(2.4) 		20
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 45.3
(-1.2)
P 		87.5
(3)
P 		41
(-1.6)
P 		51.9
(-0.5)
P 		43.6
(-1.3)
P 		26.5
(-3)
P 		61
B 103.5
(3)
P 		85.3
(1.1)
P 		47.4
(-2.8)
P 		51.4
(-2.4)
P 		58.2
(-1.7)
P 		45.1
(-3)
P 		58
C 113.4
(3)
P 		80
(0.4)
P 		44.5
(-2.3)
P 		47.8
(-2.1)
P 		41.5
(-2.6)
P 		36.1
(-3)
P 		77
avr 87.4
(3) 		84.3
(2.6) 		44.3
(-2) 		50.4
(-1.3) 		47.8
(-1.6) 		35.9
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3761
Sequence Type Exemplar sequence
Representative Public ID C26D10.5 NCBI
Target Description C26D10.5 /REP_DB=WormBase Gene ID /WP=CE03028 /TR=Q18215 /GB=CAA91123.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026816 NCBI Caenorhabditis elegans Epithelial Fusion Failure family member (eff-1) (eff-1) mRNA, complete cds. 11/11 None
SNAP00000007139 ENSEMBL cdna:SNAP chromosome:CEL140:II:8346617:8348852:1 10/11 None
GENEFINDER00000007141 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8346617:8350117:1 11/11 None
C26D10.5a ENSEMBL cdna:known chromosome:CEL140:II:8346613:8350472:1 gene:C26D10.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026817 7/11 Cross Hyb Matching Probes None
C26D10.5b 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174334 4 1 NM_001026816 175006_at (11), 181806_at (11), 181847_s_at (11)
NM_001026817 175006_at (11), 181847_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8346613-8350114(+) 100.0 100.0
Public Domain and Genome References
Ensembl C26D10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91123 Hypothetical protein C26D10.5a [Caenorhabditis elegans] ref|NP_001021987.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84282.1| EFF-1A precursor [Caenorhabditis elegans] 0.0
blast CAD36481 Hypothetical protein C26D10.5b [Caenorhabditis elegans] ref|NP_001021988.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84283.1| EFF-1B precursor [Caenorhabditis elegans] 0.0
blast CAE57697 Hypothetical protein CBG00700 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021987.1 1 562-584
C26D10.5a 1 562-584
SNAP00000007139 1 562-584
GENEFINDER00000007141 1 562-584
Sequence
Target Sequence 
>C. ELEGANS:181806_AT
gtctccgagcagattcaatggctgatattgacaaaatttgtcatgtcattgagtatttcg
agagccctttggaaatcgatcttgttgagggaaaatggcacgaaatgattggaacctgcc
caacttgtaatcaaatcaatttcaatggaatgatgaaatttctgaatccagctcattgga
tcaaaggaatcagttcgattggtgacggcgttatgattgctacggatattgttgtgtatc
tcggagttttgtgtattctgtatcttcttattacgaagattattgttccgttggttcgtt
gctgggtatgccccatgtcgattttctgcaatgggtcctcttcgtcgtccaaaaacaaaa
atgataagagaaggaaggagagagaggagaggcgcagaaaggacaaatttgtctcagaat
ccgaagatggtgcaagaagtagttccgagccccacgacactttggcgagata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCCGAGCAGATTCAATGGCTGA 136 471 1469 Antisense
GAGCCCTTTGGAAATCGATCTTGTT 315 383 1530 Antisense
GAAATTTCTGAATCCAGCTCATTGG 516 363 1623 Antisense
AATCAGTTCGATTGGTGACGGCGTT 426 169 1656 Antisense
GTGACGGCGTTATGATTGCTACGGA 640 481 1670 Antisense
TATTGTTGTGTATCTCGGAGTTTTG 231 665 1695 Antisense
GATTATTGTTCCGTTGGTTCGTTGC 610 427 1746 Antisense
TCCGTTGGTTCGTTGCTGGGTATGC 681 585 1755 Antisense
TATGCCCCATGTCGATTTTCTGCAA 350 657 1775 Antisense
ATTTTCTGCAATGGGTCCTCTTCGT 574 13 1789 Antisense
AGCCCCACGACACTTTGGCGAGATA 279 83 1916 Antisense
Sequence Source Affymetrix Proprietary Database