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[181805_at]

Description Y48C3A.3 /REP_DB=WormBase Gene ID /WP=CE22138 /TR=Q9NAG5 /GB=CAB55104.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 02      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 76      6grp_total > 44      4grp_total > 55      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 1164.2
(3)
P 		924
(-2.5)
P 		900.9
(-3)
P 		947.1
(-1.9)
P 		263
B 1153.9
(3)
P 		905.9
(-1.9)
P 		1020.7
(0.4)
P 		848.8
(-3)
P 		305
C 1087.6
(3)
P 		968.8
(-1.8)
P 		1042.6
(1.2)
P 		938.8
(-3)
P 		149
avr 1135.2
(3) 		932.9
(-2.4) 		988.1
(-0.9) 		911.6
(-3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 642
1 2 3 4 5 6 range
A 1374.3
(3)
P 		1307
(2.2)
P 		1170
(0.4)
P 		1066.8
(-0.9)
P 		898.8
(-3)
P 		1253
(1.5)
P 		476
B 1125.4
(-0.7)
P 		1194.1
(0.2)
P 		1433.2
(3)
P 		956.7
(-2.7)
P 		1191.6
(0.1)
P 		927.3
(-3)
P 		506
C 1097.8
(1.7)
P 		1105.9
(1.8)
P 		1181.4
(3)
P 		1030.5
(0.7)
P 		791.5
(-3)
P 		1064.1
(1.2)
P 		390
avr 1199.2
(1.8) 		1202.3
(1.8) 		1261.5
(3) 		1018
(-1.9) 		960.6
(-3) 		1081.5
(-0.6) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 423.9
(3)
P 		200.6
(-1.7)
P 		235.5
(-1)
P 		138.6
(-3)
P 		285
B 368
(3)
P 		223.7
(-1.6)
P 		236.5
(-1.2)
P 		180.9
(-3)
P 		187
C 360
(2.9)
P 		278.5
(0.5)
P 		363.4
(3)
P 		158.3
(-3)
P 		205
avr 384
(3) 		234.3
(-1) 		278.5
(0.2) 		159.3
(-3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 253.3
(-3)
P 		464.8
(3)
P 		254.8
(-3)
P 		270.6
(-2.5)
P 		271.2
(-2.5)
P 		305.1
(-1.5)
P 		212
B 391.6
(0.6)
P 		397.5
(0.7)
P 		348
(-0.5)
P 		253.4
(-3)
P 		484.1
(3)
P 		345.8
(-0.6)
P 		231
C 406.9
(3)
P 		337.4
(0.9)
P 		300.7
(-0.2)
P 		207.2
(-3)
P 		256.1
(-1.5)
P 		356.2
(1.5)
P 		200
avr 350.6
(1.1) 		399.9
(3) 		301.2
(-0.8) 		243.7
(-3) 		337.1
(0.6) 		335.7
(0.5) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2990
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.3 NCBI
Target Description Y48C3A.3 /REP_DB=WormBase Gene ID /WP=CE22138 /TR=Q9NAG5 /GB=CAB55104.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064412 NCBI Caenorhabditis elegans Y48C3A.3 (Y48C3A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000006675 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13309186:13311314:1 11/11 None
Y48C3A.3 ENSEMBL cdna:known chromosome:CEL140:II:13309186:13311314:1 gene:Y48C3A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006615 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13309182-13311311(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.3
Entrez Gene 190020 Entrez gene
SwissProt Q9NAG5 EMBL-EBI
WormBase CE22138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55104 Hypothetical protein Y48C3A.3 [Caenorhabditis elegans] ref|NP_496813.1| Y48C3A.3 [Caenorhabditis elegans] 1.0E-172
blast CAE73366 Hypothetical protein CBG20802 [Caenorhabditis briggsae] 1.0E-142
blast XP_393141 PREDICTED: similar to ENSANGP00000008196 [Apis mellifera] 1.0E-39
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 9.80000019073486
Sequence
Target Sequence 
>C. ELEGANS:181805_AT
ggatgatcacttatctgctgagcaaaaagccacgtcacgagcttttgaggcaatgtcgga
gaagtcattggccatttctgcatgctactaccgaatggaaaatgttgaaaagatgctcga
ccaattcgacccgaaacttttcggaatctttggttttctcttcaaattgattggctcaag
gacttatgtttctgctttgctccgcagaatcaccggctcagacatcggattccacagtcg
cgaggacattatcaacattgggagtgaagacctgaaagcgatcagcaaatatttgggaaa
taagcactatttccacggattcaagccaaccaaagtcgacgcatgcatcttctcccatct
gtgtcaaatctattatgctccgtatacgagtgagcaccgtgatttgatcgacggagaatg
caagaatttggccgaatatgtcgagaggattaagaatagattctacccggattgggatga
cgtcaccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGATCACTTATCTGCTGAGCAA 472 513 420 Antisense
AAGCCACGTCACGAGCTTTTGAGGC 349 149 446 Antisense
CCATTTCTGCATGCTACTACCGAAT 695 269 491 Antisense
AAAGATGCTCGACCAATTCGACCCG 471 121 528 Antisense
TCGGAATCTTTGGTTTTCTCTTCAA 276 607 560 Antisense
AGGACTTATGTTTCTGCTTTGCTCC 613 55 598 Antisense
GAATCACCGGCTCAGACATCGGATT 434 327 626 Antisense
ACATCGGATTCCACAGTCGCGAGGA 446 105 641 Antisense
CAAGCCAACCAAAGTCGACGCATGC 355 185 741 Antisense
CTTCTCCCATCTGTGTCAAATCTAT 345 221 768 Antisense
CCCGGATTGGGATGACGTCACCACC 266 259 885 Antisense
Sequence Source Affymetrix Proprietary Database