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[181804_at]

Description Y40B1B.5 /REP_DB=WormBase Gene ID /WP=CE20239 /TR=Q9XWP7 /GB=CAA21603.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 51      6grp_total > 36      4grp_total > 25      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 1022.8
(-3)
P 		1313
(1.6)
P 		1133
(-1.3)
P 		1404.3
(3)
P 		382
B 1083.5
(-2.1)
P 		1101.2
(-1.8)
P 		1010.3
(-3)
P 		1475.1
(3)
P 		465
C 1031.3
(-3)
P 		1296.7
(1.7)
P 		1368.1
(3)
P 		1191.6
(-0.1)
P 		337
avr 1045.9
(-3) 		1237
(0.7) 		1170.5
(-0.6) 		1357
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 576
1 2 3 4 5 6 range
A 764.4
(1.1)
P 		922.9
(3)
P 		472.2
(-2.3)
P 		577.4
(-1.1)
P 		416
(-3)
P 		617.1
(-0.6)
P 		507
B 662.4
(3)
P 		483.8
(-1.4)
P 		551.9
(0.3)
P 		419.8
(-3)
P 		460
(-2)
P 		504.9
(-0.9)
P 		243
C 729.9
(3)
P 		474
(-1)
P 		704.3
(2.6)
P 		346.6
(-3)
P 		502.4
(-0.6)
P 		630.2
(1.4)
P 		383
avr 718.9
(3) 		626.9
(1) 		576.1
(-0.2) 		447.9
(-3) 		459.5
(-2.7) 		584.1
(0) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 372.4
(3)
P 		285
(-0.1)
P 		296.2
(0.3)
P 		205.6
(-3)
P 		167
B 345.5
(3)
P 		272
(-1)
P 		234.1
(-3)
P 		314.3
(1.3)
P 		111
C 341.4
(0.1)
P 		372.8
(0.7)
P 		476.8
(3)
P 		200.9
(-3)
P 		276
avr 353.1
(3) 		309.9
(0.7) 		335.7
(2.1) 		240.3
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 140.9
(-2)
P 		328.2
(3)
P 		102.8
(-3)
P 		146.4
(-1.8)
P 		125.5
(-2.4)
P 		150.2
(-1.7)
P 		225
B 230.5
(3)
P 		161
(-0.5)
P 		134
(-1.9)
P 		111.2
(-3)
P 		186.9
(0.8)
P 		188.3
(0.9)
P 		119
C 270.5
(3)
P 		144.6
(-0.8)
P 		179.3
(0.3)
P 		69.7
(-3)
P 		162.6
(-0.2)
P 		211
(1.2)
P 		201
avr 214
(3) 		211.3
(2.8) 		138.7
(-1.3) 		109.1
(-3) 		158.3
(-0.2) 		183.2
(1.2) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.697
Sequence Type Exemplar sequence
Representative Public ID Y40B1B.5 NCBI
Target Description Y40B1B.5 /REP_DB=WormBase Gene ID /WP=CE20239 /TR=Q9XWP7 /GB=CAA21603.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060964 NCBI Caenorhabditis elegans Y40B1B.5 (Y40B1B.5) mRNA, complete cds. 11/11 None
SNAP00000004545 ENSEMBL cdna:SNAP chromosome:CEL140:I:13434163:13445828:1 11/11 None
GENEFINDER00000004555 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13443624:13445828:1 11/11 None
Y40B1B.5 ENSEMBL cdna:known chromosome:CEL140:I:13443607:13446072:1 gene:Y40B1B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067096 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020828 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13443554-13445759(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B1B.5
Entrez Gene 173213 Entrez gene
SwissProt Q9XWP7 EMBL-EBI
WormBase CE20239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21607 Hypothetical protein Y40B1B.8 [Caenorhabditis elegans] ref|NP_493364.1| Y40B1B.8 [Caenorhabditis elegans] 0.0
blast CAE63533 Hypothetical protein CBG08013 [Caenorhabditis briggsae] 0.0
blast CAA21603 Hypothetical protein Y40B1B.5 [Caenorhabditis elegans] ref|NP_493365.1| Y40B1B.5 [Caenorhabditis elegans] 3.0E-71
blast CAA21603 Hypothetical protein Y40B1B.5 [Caenorhabditis elegans] ref|NP_493365.1| Y40B1B.5 [Caenorhabditis elegans] 2.0E-70
blast CAE63534 Hypothetical protein CBG08014 [Caenorhabditis briggsae] 7.0E-44
blast CAE56082 Hypothetical protein CBG23663 [Caenorhabditis briggsae] 7.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:181804_AT
acgatttcgagcccgaggtgtcgacgttcaagcgtgcggagccagctccagagcccgtga
aaatcgtcgacgcaccaccgccaccacagaaagccgctcccgcagctccgaaaactctga
aagccgctccaacattcgccatggaatcacttggacgagaactgacgtcggctgaaaaag
aagcgatacagaagaaaaatgatctcgcgttggctcgtgatttgttcggagatgatgatt
ctgctgaagccactgacgaagcgaagacctatgcgaatatcatgtcgaaagccgatttcg
agtactggggagagcgtgtcggtggatttttggcttcacggagtaaagcatcctgttatg
gagatatgattggaaaacttctcacttccgtcactgatgagatgacacccgccgaaatcc
tgaaaatggtcaccttccttcaacagatcagcgccgccaagaagactgccgagaagacga
aagcgaaggccaccaccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATTTCGAGCCCGAGGTGTCGAC 347 93 32 Antisense
GTGTCGACGTTCAAGCGTGCGGAGC 560 485 49 Antisense
GAGCCCGTGAAAATCGTCGACGCAC 3 387 82 Antisense
TCCCGCAGCTCCGAAAACTCTGAAA 578 597 129 Antisense
AACTCTGAAAGCCGCTCCAACATTC 599 141 144 Antisense
AAAAATGATCTCGCGTTGGCTCGTG 553 129 226 Antisense
GTCGGTGGATTTTTGGCTTCACGGA 152 471 349 Antisense
TGACACCCGCCGAAATCCTGAAAAT 671 571 434 Antisense
GAAAATGGTCACCTTCCTTCAACAG 58 355 453 Antisense
AGATCAGCGCCGCCAAGAAGACTGC 135 67 476 Antisense
AGACGAAAGCGAAGGCCACCACCGC 404 69 506 Antisense
Sequence Source Affymetrix Proprietary Database