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[181803_at]

Description W03F8.8 /REP_DB=WormBase Gene ID /WP=CE17277 /TR=O44569 /GB=AAB94186.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 192.1
(3)
P 		180.4
(1.4)
P 		148
(-3)
A 		166.5
(-0.5)
P 		44
B 216.7
(3)
P 		133.8
(-2.2)
A 		121.3
(-3)
A 		209
(2.5)
P 		95
C 188.1
(2)
P 		124.7
(-0.9)
P 		80.5
(-3)
A 		208.5
(3)
P 		128
avr 199
(3) 		146.3
(-0.8) 		116.6
(-3) 		194.7
(2.7) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 164.3
(3)
P 		145.6
(1.9)
P 		119.2
(0.4)
P 		101.8
(-0.6)
A 		59.1
(-3)
A 		112
(0)
P 		105
B 208.5
(3)
P 		137.5
(-0.2)
P 		82
(-2.7)
P 		74.6
(-3)
A 		103.9
(-1.7)
A 		106.8
(-1.6)
P 		134
C 162.7
(3)
P 		157.5
(2.6)
P 		96.7
(-1.6)
A 		76.3
(-3)
P 		101.1
(-1.3)
A 		96.3
(-1.6)
P 		86
avr 178.5
(3) 		146.9
(1) 		99.3
(-2) 		84.2
(-3) 		88
(-2.8) 		105
(-1.7) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 69.9
(3)
P 		39.2
(-1)
P 		38.7
(-1.1)
A 		24.4
(-3)
P 		46
B 69.1
(3)
P 		33.1
(-2.3)
A 		28.1
(-3)
A 		44.5
(-0.6)
P 		41
C 62.3
(3)
P 		35.9
(-1.6)
P 		28.1
(-3)
A 		35.1
(-1.8)
P 		34
avr 67.1
(3) 		36.1
(-2.2) 		31.6
(-3) 		34.7
(-2.5) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 30.3
(-0.8)
P 		51.8
(3)
P 		26
(-1.6)
P 		25.8
(-1.6)
A 		17.8
(-3)
A 		27.3
(-1.3)
P 		34
B 72.6
(3)
P 		45.8
(-0)
P 		19.9
(-3)
P 		19.7
(-3)
A 		42.2
(-0.4)
A 		39.8
(-0.7)
P 		53
C 60.3
(3)
P 		48
(1.4)
P 		24.6
(-1.8)
A 		15.3
(-3)
P 		32.7
(-0.7)
A 		32.2
(-0.7)
P 		45
avr 54.4
(3) 		48.5
(2) 		23.5
(-2.4) 		20.3
(-3) 		30.9
(-1.1) 		33.1
(-0.7) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11096
Sequence Type Exemplar sequence
Representative Public ID W03F8.8 NCBI
Target Description W03F8.8 /REP_DB=WormBase Gene ID /WP=CE17277 /TR=O44569 /GB=AAB94186.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068337(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068337 NCBI Caenorhabditis elegans W03F8.8 (W03F8.8) mRNA, complete cds. 9/11 None
SNAP00000036705 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5189092:5194874:-1 11/11 None
GENEFINDER00000036710 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5189092:5189467:-1 11/11 None
W03F8.8 ENSEMBL cdna:known chromosome:CEL140:IV:5189024:5189735:-1 gene:W03F8.8 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5189097-5189767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03F8.8
Entrez Gene 189160 Entrez gene
SwissProt O44569 EMBL-EBI
WormBase CE35041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94191 Hypothetical protein W03F8.9 [Caenorhabditis elegans] ref|NP_500740.1| W03F8.9 [Caenorhabditis elegans] 1.0E-62
blast CAE72826 Hypothetical protein CBG20108 [Caenorhabditis briggsae] 2.0E-62
blast AAB94186 Hypothetical protein W03F8.8 [Caenorhabditis elegans] ref|NP_500738.2| W03F8.8 [Caenorhabditis elegans] 9.0E-26
blast CAE72826 Hypothetical protein CBG20108 [Caenorhabditis briggsae] 3.0E-12
blast BAA81703.1 G protein a subunit 7 [Ephydatia fluviatilis] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:181803_AT
cagtaaccgtattcgaatctctcgtaaataatccagttctcgccaaagtttactggttac
ttctgttcaacaaagccgacacattcaatgatcactcggctggatttgatttccgaaagc
tcgcaaatcatctggacactgctgacagtgctcgatctttctatagatctcagtttacaa
ctaaaatctcaaagacacgatgtttcccgcatatcgtgtccttagtcaacttcaaggaga
gccaatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTAACCGTATTCGAATCTCTCGT 309 207 68 Antisense
TAATCCAGTTCTCGCCAAAGTTTAC 47 631 96 Antisense
GTTTACTGGTTACTTCTGTTCAACA 601 449 115 Antisense
GTTCAACAAAGCCGACACATTCAAT 436 445 132 Antisense
GACACATTCAATGATCACTCGGCTG 384 367 145 Antisense
ATCACTCGGCTGGATTTGATTTCCG 587 27 158 Antisense
GAAAGCTCGCAAATCATCTGGACAC 461 359 182 Antisense
CTGACAGTGCTCGATCTTTCTATAG 44 237 209 Antisense
CAAAGACACGATGTTTCCCGCATAT 148 193 257 Antisense
GCATATCGTGTCCTTAGTCAACTTC 268 309 276 Antisense
GTCAACTTCAAGGAGAGCCAATCTG 2 465 292 Antisense
Sequence Source Affymetrix Proprietary Database