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[181802_at]

Description F56F4.2 /REP_DB=WormBase Gene ID /WP=CE11262 /TR=O01845 /GB=AAB54199.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 29.7
(-1.7)
A 		5.3
(-3)
A 		35.2
(-1.4)
A 		118.3
(3)
P 		113
B 23.3
(-2.8)
A 		23.7
(-2.7)
A 		22
(-3)
A 		56.8
(3)
P 		35
C 15.3
(-2.5)
A 		8.9
(-3)
A 		13.8
(-2.6)
A 		91
(3)
P 		82
avr 22.8
(-2.2) 		12.6
(-3) 		23.7
(-2.1) 		88.7
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 41.2
(1.7)
A 		2.4
(-3)
A 		40.8
(1.6)
A 		3.1
(-2.9)
A 		22.2
(-0.6)
A 		52.3
(3)
A 		50
B 9.7
(-3)
A 		24.6
(-0.3)
A 		16.8
(-1.7)
A 		35.7
(1.6)
A 		43.4
(3)
P 		32.2
(1)
A 		34
C 16.8
(-3)
A 		20.5
(-2.2)
A 		21.4
(-2.1)
A 		26.6
(-1)
A 		35.1
(0.7)
A 		46.1
(3)
P 		29
avr 22.6
(-1.5) 		15.8
(-3) 		26.3
(-0.7) 		21.8
(-1.7) 		33.6
(0.9) 		43.5
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.8
(0.6)
A 		1.1
(-3)
A 		9.2
(0)
A 		17.3
(3)
P 		16
B 7.4
(-1)
A 		5.8
(-2.4)
A 		5.1
(-3)
A 		12.1
(3)
P 		7
C 5.1
(-1.8)
A 		2.6
(-3)
A 		4.8
(-2)
A 		15.3
(3)
P 		13
avr 7.8
(-0.6) 		3.2
(-3) 		6.4
(-1.4) 		14.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.6
(0.4)
A 		0.8
(-3)
A 		8.9
(1.1)
A 		0.8
(-3)
A 		6.7
(-0)
A 		12.7
(3)
A 		12
B 3.4
(-3)
A 		8.2
(-1)
A 		4.1
(-2.7)
A 		9.5
(-0.4)
A 		17.6
(3)
P 		12
(0.6)
A 		14
C 6.2
(-2.5)
A 		6.3
(-2.5)
A 		5.5
(-2.9)
A 		5.4
(-3)
A 		11.4
(0.6)
A 		15.4
(3)
P 		10
avr 5.7
(-2.6) 		5.1
(-3) 		6.2
(-2.2) 		5.2
(-2.9) 		11.9
(1.9) 		13.4
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1565
Sequence Type Exemplar sequence
Representative Public ID F56F4.2 NCBI
Target Description F56F4.2 /REP_DB=WormBase Gene ID /WP=CE11262 /TR=O01845 /GB=AAB54199.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059371 NCBI Caenorhabditis elegans F56F4.2 (F56F4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000027774 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6154685:6155365:1 10/11 None
F56F4.2 ENSEMBL cdna:known chromosome:CEL140:I:6154177:6155365:1 gene:F56F4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027763 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6154176-6155365(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F4.2
Entrez Gene 186397 Entrez gene
SwissProt O01845 EMBL-EBI
WormBase CE11262 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54199 Hypothetical protein F56F4.2 [Caenorhabditis elegans] ref|NP_491772.1| F56F4.2 [Caenorhabditis elegans] 1.0E-158
blast AAB54199 Hypothetical protein F56F4.2 [Caenorhabditis elegans] ref|NP_491772.1| F56F4.2 [Caenorhabditis elegans] 3.0E-89
blast CAE72960 Hypothetical protein CBG20294 [Caenorhabditis briggsae] 5.0E-27
blast CAE72961 Hypothetical protein CBG20295 [Caenorhabditis briggsae] 7.0E-25
blast CAE72959 Hypothetical protein CBG20293 [Caenorhabditis briggsae] 2.0E-24
blast CAE72960 Hypothetical protein CBG20294 [Caenorhabditis briggsae] 7.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.6E-46
Pfam IPR001534 EMBL-EBI Transthyretin-like 4.8E-9
Pfam IPR001534 EMBL-EBI Transthyretin-like 9.2E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027774 1 15-32
Sequence
Target Sequence 
>C. ELEGANS:181802_AT
ttcttaatctttgccgtgtgtatcctgtcagtttgtgctgataaaaagtccattcgcatc
actggacggatgatgtgtcgtggacaaccagcacaatatgtacaacttcaaatcctaaca
aagaggcttttcactggtcaatatactttgatgaaaatgcttcataaaattgaaatgttt
tcaggtaatgctatcatggctgaaaatgtgttcactgatccaaatggttactttgacatt
gctggatacgttgatcaatcttctggtgttcgaggtcgtttttgggtttggcatgaatgt
ttttctcaaaagtatcataaggatccgtgcaaaaattggtttgggctgaacattcctgat
gagttcgtaaccggcgctgcattgcccagagctgtatggccacttggagaagttgattta
gaagatgagcagaaaaaagagtacttggataaatgcgcttccaatgccccacaaaatata
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTAATCTTTGCCGTGTGTATCC 254 691 400 Antisense
GTGTGTATCCTGTCAGTTTGTGCTG 31 489 415 Antisense
AAGTCCATTCGCATCACTGGACGGA 582 157 445 Antisense
GATGTGTCGTGGACAACCAGCACAA 184 409 471 Antisense
GAGGCTTTTCACTGGTCAATATACT 667 403 522 Antisense
AATCTTCTGGTGTTCGAGGTCGTTT 296 169 656 Antisense
GAGGTCGTTTTTGGGTTTGGCATGA 100 403 671 Antisense
TGGTTTGGGCTGAACATTCCTGATG 293 551 736 Antisense
TTCCTGATGAGTTCGTAACCGGCGC 275 697 752 Antisense
ATTGCCCAGAGCTGTATGGCCACTT 424 5 780 Antisense
GCTTCCAATGCCCCACAAAATATAA 317 305 856 Antisense
Sequence Source Affymetrix Proprietary Database