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[181801_at]

Description D1022.4 /REP_DB=WormBase Gene ID /WP=CE02578 /TR=Q18926 /GB=AAB93337.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 42      6grp_total > 52      4grp_total > 09      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 671.5
(2.5)
P 		574.5
(-3)
P 		659.8
(1.9)
P 		679.6
(3)
P 		105
B 592.3
(-3)
P 		727.4
(-1.3)
P 		732.5
(-1.2)
P 		1066.4
(3)
P 		474
C 631.7
(-3)
P 		694.4
(-1.9)
P 		707.7
(-1.7)
P 		978.4
(3)
P 		347
avr 631.8
(-3) 		665.4
(-2.3) 		700
(-1.5) 		908.1
(3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 698
1 2 3 4 5 6 range
A 619
(-2.7)
P 		1044.3
(1.6)
P 		1188.5
(3)
P 		1066.4
(1.8)
P 		622.9
(-2.6)
P 		585.2
(-3)
P 		603
B 744
(-1.7)
P 		783.3
(-1.4)
P 		1282.8
(3)
P 		812.3
(-1.1)
P 		598.1
(-3)
P 		605.1
(-2.9)
P 		685
C 904.1
(-0.4)
P 		807.9
(-1.3)
P 		1256.4
(3)
P 		920.4
(-0.2)
P 		762
(-1.7)
P 		627.4
(-3)
P 		629
avr 755.7
(-1.6) 		878.5
(-0.4) 		1242.6
(3) 		933
(0.1) 		661
(-2.5) 		605.9
(-3) 		637
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 244.5
(3)
P 		124.7
(-2)
P 		172.5
(0)
P 		99.5
(-3)
P 		145
B 188.9
(-1)
P 		179.7
(-2)
P 		169.7
(-3)
P 		227.3
(3)
P 		58
C 209.1
(0.2)
P 		199.6
(-0.5)
P 		246.7
(3)
P 		165
(-3)
P 		82
avr 214.2
(3) 		168
(-2.5) 		196.3
(0.9) 		163.9
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 114.1
(-3)
P 		371.4
(3)
P 		258.8
(0.4)
P 		270.5
(0.6)
P 		188
(-1.3)
P 		142.5
(-2.3)
P 		257
B 258.9
(-0.3)
P 		260.7
(-0.2)
P 		311.5
(3)
P 		215.1
(-3)
P 		243
(-1.3)
P 		225.6
(-2.3)
P 		96
C 335.1
(3)
P 		246.5
(-0.5)
P 		319.8
(2.4)
P 		185.1
(-3)
P 		246.6
(-0.5)
P 		210
(-2)
P 		150
avr 236
(-0.5) 		292.9
(2.8) 		296.7
(3) 		223.6
(-1.2) 		225.9
(-1.1) 		192.7
(-3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4651
Sequence Type Exemplar sequence
Representative Public ID D1022.4 NCBI
Target Description D1022.4 /REP_DB=WormBase Gene ID /WP=CE02578 /TR=Q18926 /GB=AAB93337.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063160 NCBI Caenorhabditis elegans D1022.4 (D1022.4) mRNA, complete cds. 11/11 None
SNAP00000004644 ENSEMBL cdna:SNAP chromosome:CEL140:II:7456336:7457215:-1 11/11 None
GENEFINDER00000004661 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7456336:7457215:-1 11/11 None
D1022.4 ENSEMBL cdna:known chromosome:CEL140:II:7456257:7457236:-1 gene:D1022.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7456332-7457212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1022.4
Entrez Gene 174215 Entrez gene
SwissProt Q18926 EMBL-EBI
WormBase CE02578 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495561 D1022.4 [Caenorhabditis elegans] gb|AAB93337.1| Hypothetical protein D1022.4 [Caenorhabditis elegans] 1.0E-138
blast CAE67535 Hypothetical protein CBG13058 [Caenorhabditis briggsae] 1.0E-100
blast CAE67534 Hypothetical protein CBG13057 [Caenorhabditis briggsae] 3.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 6.1E-100
Sequence
Target Sequence 
>C. ELEGANS:181801_AT
gattttcccagctttccgaggaattacgcatttcgaaaaggacaaaggccaacaaattgc
cgagcttggattcgttgcttttgttgctgatgtctatggaaaaggtgtgagaccaactga
acgagcagatgcatttgcaacaatgggaccgcttgtttccaatcgcgttgagaaactgaa
accaagactttttgccgctgtcaatactttgaagactttctctgaagtggacacctcaaa
aattgcagcaatcggatattgtttcggtgggctttgtgttctcgatttggcaagatacaa
tgctggactcaaaggagttgtatcctatcatggaactttgaaaccaattcctgatattgc
tctagatccaattgttggaacaactgtgtatgttcatcacggagacgcagacttccatat
tgcaaaagatcaagttgatggatttcatgaagaaatgagaactcgtcaagctgattttgt
ctttgtatcgcatgcaaatgcagttcatgctttcactgagccagaagctgacagtttcaa
tgcaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTCCCAGCTTTCCGAGGAATT 524 429 123 Antisense
AATTGCCGAGCTTGGATTCGTTGCT 572 177 177 Antisense
GATTCGTTGCTTTTGTTGCTGATGT 261 433 191 Antisense
ACCGCTTGTTTCCAATCGCGTTGAG 380 89 270 Antisense
GAAACCAAGACTTTTTGCCGCTGTC 577 357 300 Antisense
GACTTTCTCTGAAGTGGACACCTCA 202 373 336 Antisense
GATATTGTTTCGGTGGGCTTTGTGT 567 427 377 Antisense
GGCTTTGTGTTCTCGATTTGGCAAG 495 537 392 Antisense
ATCACGGAGACGCAGACTTCCATAT 135 29 518 Antisense
GCAGTTCATGCTTTCACTGAGCCAG 686 311 622 Antisense
GAAGCTGACAGTTTCAATGCACCAG 124 343 646 Antisense
Sequence Source Affymetrix Proprietary Database