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[181800_at]

Description C56E6.1 /REP_DB=WormBase Gene ID /WP=CE04273 /TR=Q18901 /GB=AAA81093.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 28      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 42.3
(-3)
A 		131.6
(3)
A 		74.7
(-0.8)
A 		107.9
(1.4)
A 		89
B 125.8
(3)
A 		67.7
(-2.1)
A 		57.4
(-3)
A 		69.1
(-2)
A 		68
C 100.2
(0.4)
M 		58.6
(-2.4)
A 		49.7
(-3)
A 		140
(3)
A 		90
avr 89.4
(0.8) 		86
(0.4) 		60.6
(-3) 		105.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 57
(-0.2)
A 		81.8
(3)
A 		35.3
(-3)
A 		55.3
(-0.4)
P 		39
(-2.5)
A 		46.4
(-1.6)
A 		47
B 40.2
(-0.5)
A 		51.7
(1.6)
A 		35.5
(-1.3)
A 		26.2
(-3)
A 		59.7
(3)
M 		55.6
(2.3)
A 		34
C 72.6
(1.6)
A 		85.5
(2.6)
A 		90.4
(3)
A 		54.1
(0.2)
A 		12.6
(-3)
A 		28.4
(-1.8)
A 		78
avr 56.6
(0.3) 		73
(3) 		53.7
(-0.2) 		45.2
(-1.6) 		37.1
(-3) 		43.5
(-1.9) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 15.4
(-3)
A 		28.6
(3)
A 		19.5
(-1.1)
A 		15.8
(-2.8)
A 		13
B 40.1
(3)
A 		16.7
(-2.2)
A 		13.3
(-3)
A 		14.7
(-2.7)
A 		27
C 33.2
(3)
M 		16.8
(-3)
A 		17.3
(-2.8)
A 		23.6
(-0.5)
A 		16
avr 29.6
(3) 		20.7
(-1.1) 		16.7
(-3) 		18
(-2.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10.5
(-2.2)
A 		29.1
(3)
A 		7.7
(-3)
A 		14
(-1.2)
P 		11.8
(-1.9)
A 		11.3
(-2)
A 		21
B 14
(-0.5)
A 		17.2
(0.6)
A 		8.6
(-2.4)
A 		6.9
(-3)
A 		24.2
(3)
M 		20.7
(1.8)
A 		17
C 26.9
(3)
A 		26.1
(2.8)
A 		23
(2)
A 		10.9
(-1.2)
A 		4.1
(-3)
A 		9.5
(-1.6)
A 		23
avr 17.1
(-0.1) 		24.1
(3) 		13.1
(-1.9) 		10.6
(-3) 		13.4
(-1.8) 		13.8
(-1.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5932
Sequence Type Exemplar sequence
Representative Public ID C56E6.1 NCBI
Target Description C56E6.1 /REP_DB=WormBase Gene ID /WP=CE04273 /TR=Q18901 /GB=AAA81093.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062920 NCBI Caenorhabditis elegans C56E6.1 (C56E6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033870 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6536331:6540099:1 9/11 None
C56E6.1 ENSEMBL cdna:known chromosome:CEL140:II:6532124:6540103:1 gene:C56E6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033863 2/11 Cross Hyb Matching Probes None
SNAP00000033865 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6532120-6540100(+) 99.16 100.0
Public Domain and Genome References
Gene Title
Ensembl C56E6.1
Entrez Gene 183860 Entrez gene
SwissProt Q18901 EMBL-EBI
WormBase CE04273 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81093 Hypothetical protein C56E6.1 [Caenorhabditis elegans] ref|NP_495321.1| C56E6.1 [Caenorhabditis elegans] 0.0
blast CAE59341 Hypothetical protein CBG02686 [Caenorhabditis briggsae] 0.0
blast EAA01067 ENSANGP00000019849 [Anopheles gambiae str. PEST] ref|XP_320998.2| ENSANGP00000019849 [Anopheles gambiae str. PEST] 3.0E-35
blast XP_416174 PREDICTED: similar to down-regulated in metastasis [Gallus gallus] 1.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495321.1 6 388-410,417-434,449-468,506-528,548-570,577-599
C56E6.1 6 388-410,417-434,449-468,506-528,548-570,577-599
Sequence
Target Sequence 
>C. ELEGANS:181800_AT
aattcagcttttcactttcttcgaaactattccagatgttgctgaacgaagaacacgtgt
tatcagtccacttctcctggctaaatcggtttatcttgagccgaagattctggtaatgta
tgaagaacttcttggatcgaaattcgaaggagtacagaaagctgcacttgcgtgtatttt
ctcctacagaaacacgattcttgcaaattaccgcgaaaatctggaggcattaatcgatga
gaagactttgaggcagacactccctcatttcaaactttctgatgatgaaggagatgctca
agttgtcgatgagcatcgagcgattgttgttccagttttattgagattattaaatggaaa
attactcatcaacaataagcaggcaggaatgatctcccgaagaaacggaattatttatat
aattggtggttgtcgaagtgaagaactgacatttttccttcgtttgttctttgcacaagt
ctacaaagtttttggtaagttgaattaccaaatctctaagggtaatgctcttattccagg
ccaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAGCTTTTCACTTTCTTCGAA 188 177 4389 Antisense
AACACGTGTTATCAGTCCACTTCTC 626 135 4440 Antisense
TCCACTTCTCCTGGCTAAATCGGTT 686 587 4455 Antisense
GAGTACAGAAAGCTGCACTTGCGTG 693 397 4538 Antisense
CACTTGCGTGTATTTTCTCCTACAG 312 197 4553 Antisense
TTGAGGCAGACACTCCCTCATTTCA 631 705 4636 Antisense
GCATCGAGCGATTGTTGTTCCAGTT 496 309 4701 Antisense
GCAGGCAGGAATGATCTCCCGAAGA 415 309 4767 Antisense
AGAACTGACATTTTTCCTTCGTTTG 543 71 4830 Antisense
TTCCTTCGTTTGTTCTTTGCACAAG 501 695 4843 Antisense
TAATGCTCTTATTCCAGGCCAGGAT 646 635 4911 Antisense
Sequence Source Affymetrix Proprietary Database