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[181799_at]

Description F40H7.4 /REP_DB=WormBase Gene ID /WP=CE10204 /TR=O17089 /GB=AAF39804.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.6
(-2.8)
A 		3.9
(-3)
A 		6.9
(-2.2)
A 		27.2
(3)
A 		23
B 13.7
(-0.3)
A 		4.7
(-3)
A 		12.2
(-0.8)
A 		24.9
(3)
A 		20
C 13.8
(3)
A 		3.9
(-2.3)
A 		2.5
(-3)
A 		6.2
(-1)
A 		11
avr 10.7
(-0.4) 		4.2
(-3) 		7.2
(-1.8) 		19.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 16.5
(-2.1)
A 		6.2
(-2.8)
A 		4.3
(-3)
A 		3.9
(-3)
A 		6.7
(-2.8)
A 		89.6
(3)
A 		86
B 8.1
(-2.8)
A 		4.1
(-3)
A 		19.8
(-2.3)
A 		6.9
(-2.9)
A 		6.3
(-2.9)
A 		131.5
(3)
A 		127
C 30.9
(-1.4)
A 		3.6
(-2.9)
A 		21.3
(-1.9)
A 		10.4
(-2.6)
A 		2.7
(-3)
A 		108.6
(3)
A 		106
avr 18.5
(-2.2) 		4.6
(-3) 		15.1
(-2.4) 		7.1
(-2.9) 		5.2
(-3) 		109.9
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.7
(-1.5)
A 		0.9
(-3)
A 		1.8
(-1.3)
A 		4
(3)
A 		3
B 4.4
(1.7)
A 		1.2
(-3)
A 		2.8
(-0.7)
A 		5.3
(3)
A 		4
C 4.6
(3)
A 		1.1
(-2.7)
A 		0.9
(-3)
A 		1.1
(-2.7)
A 		4
avr 3.6
(3) 		1.1
(-3) 		1.8
(-1.3) 		3.5
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 3
(-2.4)
A 		2.2
(-2.6)
A 		0.9
(-3)
A 		1
(-3)
A 		2
(-2.7)
A 		21.8
(3)
A 		21
B 2.8
(-2.8)
A 		1.4
(-3)
A 		4.8
(-2.6)
A 		1.8
(-2.9)
A 		2.5
(-2.9)
A 		49
(3)
A 		48
C 11.5
(-1.2)
A 		1.1
(-3)
A 		5.4
(-2.2)
A 		2.1
(-2.8)
A 		0.9
(-3)
A 		36.4
(3)
A 		36
avr 5.8
(-2.3) 		1.6
(-3) 		3.7
(-2.6) 		1.6
(-3) 		1.8
(-3) 		35.7
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5956
Sequence Type Exemplar sequence
Representative Public ID F40H7.4 NCBI
Target Description F40H7.4 /REP_DB=WormBase Gene ID /WP=CE10204 /TR=O17089 /GB=AAF39804.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026980 NCBI Caenorhabditis elegans F40H7.12 (F40H7.12) mRNA, complete cds. 11/11 None
SNAP00000031697 ENSEMBL cdna:SNAP chromosome:CEL140:II:3687840:3688685:-1 11/11 None
GENEFINDER00000031716 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3687840:3688685:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3687838-3690739(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565379 Entrez gene
SwissProt Q4W516 EMBL-EBI
WormBase CE38709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55835 Hypothetical protein F40H7.12 [Caenorhabditis elegans] ref|NP_001022151.1| F40H7.12 [Caenorhabditis elegans] 1.0E-145
blast CAE65538 Hypothetical protein CBG10515 [Caenorhabditis briggsae] 2.0E-44
blast CAB04067 Hypothetical protein F09C6.1 [Caenorhabditis elegans] ref|NP_507266.1| F09C6.1 [Caenorhabditis elegans] 3.0E-44
Sequence
Target Sequence 
>C. ELEGANS:181799_AT
tgctggctttggaactctagcgggcgcagtggtaggaggacctgtggctagtcttgccgt
tggagccggaactacaggtttgcaatcgattttcactgaactcgggctggaggatcagaa
gaaagatgcagcagtggcttcgctgtcctctggacattcggaagaggcggccaagattgt
tgtggaagctggccaacagaagatcagggaaaatgtgcatcgtttgtcggcggaatctgg
aggtcgaagaaggctccgatcctgtcacgggacttatcttcgtgcgtacgattgggattt
gaaggtggatatgaagaccggcaatccggagtcatgggaaaactggtacatcgaggactg
gaagggaagcgtcgtcttcaaggcaatccattctcctggtaaattcctgagtgctcacga
agggagcaaagatgtgagcctcgtgatgcaccatcctaaatcctgggaaatgtggaagcc
gttcaagaacgacaatggatcctggtcgttcctcagtgttcatggggcttggctcagtgc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGGCTTTGGAACTCTAGCGGGC 476 581 996 Antisense
AGGAGGACCTGTGGCTAGTCTTGCC 514 55 1029 Antisense
GTCTTGCCGTTGGAGCCGGAACTAC 293 467 1046 Antisense
CTTCGCTGTCCTCTGGACATTCGGA 488 217 1133 Antisense
ATGTGCATCGTTTGTCGGCGGAATC 161 49 1208 Antisense
CGATCCTGTCACGGGACTTATCTTC 631 247 1252 Antisense
GTCGTCTTCAAGGCAATCCATTCTC 31 473 1366 Antisense
ATCCATTCTCCTGGTAAATTCCTGA 602 37 1381 Antisense
AGATGTGAGCCTCGTGATGCACCAT 565 65 1425 Antisense
GATGCACCATCCTAAATCCTGGGAA 625 411 1440 Antisense
TGTTCATGGGGCTTGGCTCAGTGCA 112 563 1512 Antisense
Sequence Source Affymetrix Proprietary Database