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[181797_at]

Description F17H10.1 /REP_DB=WormBase Gene ID /WP=CE03226 /TR=Q19534 /GB=CAA93682.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 17      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 271.3
(-3)
P 		417.5
(-1)
P 		366.3
(-1.7)
P 		708.6
(3)
P 		437
B 271.7
(-3)
P 		400.6
(-1.3)
P 		364.3
(-1.8)
P 		721.7
(3)
P 		450
C 267.2
(-3)
P 		454.3
(0.1)
P 		359.5
(-1.5)
P 		629.5
(3)
P 		362
avr 270.1
(-3) 		424.1
(-0.8) 		363.4
(-1.7) 		686.6
(3) 		417

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 246.9
(-3)
P 		264.5
(-2.6)
P 		282.8
(-2.2)
P 		261.4
(-2.7)
P 		296.2
(-1.9)
P 		525.8
(3)
P 		279
B 256.7
(-1.7)
P 		205.4
(-3)
P 		338.7
(0.4)
P 		252.2
(-1.8)
P 		340.6
(0.5)
P 		440.3
(3)
P 		235
C 414.8
(3)
P 		207
(-3)
P 		335
(0.7)
P 		304.8
(-0.2)
P 		363
(1.5)
P 		350.5
(1.1)
P 		208
avr 306.1
(-0.7) 		225.6
(-3) 		318.8
(-0.4) 		272.8
(-1.7) 		333.3
(0) 		438.9
(3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 98.8
(0.8)
P 		90.6
(-3)
P 		95.8
(-0.6)
P 		103.7
(3)
P 		13
B 86.6
(-2.8)
P 		98.9
(-1.7)
P 		84.4
(-3)
P 		153.8
(3)
P 		69
C 88.4
(-3)
P 		130.6
(3)
P 		125.3
(2.2)
P 		106.1
(-0.5)
P 		42
avr 91.3
(-3) 		106.7
(0.1) 		101.8
(-0.9) 		121.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 45.5
(-3)
P 		94.1
(0.5)
P 		61.6
(-1.8)
P 		66.3
(-1.5)
P 		89.4
(0.2)
P 		128
(3)
P 		83
B 89.3
(-1.6)
P 		68.4
(-2.9)
P 		82.2
(-2.1)
P 		66.8
(-3)
P 		138.4
(1.4)
P 		164.2
(3)
P 		97
C 153.7
(3)
P 		63.2
(-2.9)
P 		85.3
(-1.4)
P 		61.3
(-3)
P 		117.5
(0.6)
P 		117.3
(0.6)
P 		92
avr 96.2
(-0.4) 		75.2
(-2.1) 		76.4
(-2) 		64.8
(-3) 		115.1
(1.2) 		136.5
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17462
Sequence Type Exemplar sequence
Representative Public ID F17H10.1 NCBI
Target Description F17H10.1 /REP_DB=WormBase Gene ID /WP=CE03226 /TR=Q19534 /GB=CAA93682.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077776 NCBI Caenorhabditis elegans F17H10.1 (F17H10.1) mRNA, complete cds. 11/11 None
SNAP00000001671 ENSEMBL cdna:SNAP chromosome:CEL140:X:13106438:13108243:1 11/11 None
GENEFINDER00000001678 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13106438:13108243:1 11/11 None
F17H10.1 ENSEMBL cdna:known chromosome:CEL140:X:13105161:13108448:1 gene:F17H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13105209-13108243(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17H10.1
Entrez Gene 181439 Entrez gene
SwissProt Q19534 EMBL-EBI
WormBase CE03226 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93682 Hypothetical protein F17H10.1 [Caenorhabditis elegans] emb|CAA93652.1| Hypothetical protein F17H10.1 [Caenorhabditis elegans] ref|NP_510177.1| F17H10.1 [Caenorhabditis elegans] 0.0
blast CAE61384 Hypothetical protein CBG05232 [Caenorhabditis briggsae] 0.0
blast CAA93682 Hypothetical protein F17H10.1 [Caenorhabditis elegans] emb|CAA93652.1| Hypothetical protein F17H10.1 [Caenorhabditis elegans] ref|NP_510177.1| F17H10.1 [Caenorhabditis elegans] 1.0E-141
blast CAA93682 Hypothetical protein F17H10.1 [Caenorhabditis elegans] emb|CAA93652.1| Hypothetical protein F17H10.1 [Caenorhabditis elegans] ref|NP_510177.1| F17H10.1 [Caenorhabditis elegans] 1.0E-137
blast CAE61384 Hypothetical protein CBG05232 [Caenorhabditis briggsae] 1.0E-130
blast CAE61384 Hypothetical protein CBG05232 [Caenorhabditis briggsae] 1.0E-126
blast CAI20612 serine active site containing 1 [Danio rerio] ref|NP_001025457.1| serine active site containing 1 [Danio rerio] 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:181797_AT
gaatatccttcatacatcttccattttaccggaacgcaacagagcttacagacccgatcc
gaaaggttcaaggagcaactggaaatagctggaataggaaaacggcctgtcctttttatt
tgccactctatgggaggtcttctcgccaaaaagctgcttatcgactcaaccaatcttctt
aaaaacactgttggagtgttgttcattgcgacaccacacaagggaagtcctgtcgcaaac
tggggatattcagtgtttcaaccaactgaagacgtacggatgctcaatgagaataatgcg
attaatagaaaactgaacgaagatttttcggcagtgagcaaggagattccggttattgtt
agtatggtggagaccgtggagtcgaatattattgccaacgccaagagcatcgtcgttccc
aacaaatcggcagtatttgagcaaggagccgtgtatcatattgcggatgtccatctgaat
ctgtgcaagcccacccgggacagcgcttcttatggagtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATCCTTCATACATCTTCCATT 213 327 958 Antisense
ACGCAACAGAGCTTACAGACCCGAT 204 91 991 Antisense
GTCCTTTTTATTTGCCACTCTATGG 76 477 1066 Antisense
CTCTATGGGAGGTCTTCTCGCCAAA 478 229 1083 Antisense
AAAAGCTGCTTATCGACTCAACCAA 24 133 1106 Antisense
GGAGTGTTGTTCATTGCGACACCAC 247 517 1150 Antisense
GCGACACCACACAAGGGAAGTCCTG 537 289 1165 Antisense
GGAAGTCCTGTCGCAAACTGGGGAT 128 531 1180 Antisense
GGGGATATTCAGTGTTTCAACCAAC 495 497 1199 Antisense
GTCGTTCCCAACAAATCGGCAGTAT 9 473 1369 Antisense
GGGACAGCGCTTCTTATGGAGTCAT 342 495 1454 Antisense
Sequence Source Affymetrix Proprietary Database