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[181796_at] 7TM chemoreceptor, srt family

Description B0238.8 /REP_DB=WormBase Gene ID /WP=CE07698 /TR=O16489 /GB=AAB65987.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 21      6grp_cgc > 37      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 10.8
(-1.5)
A 		9.8
(-1.8)
A 		4.2
(-3)
A 		31.3
(3)
A 		27
B 27.1
(-3)
A 		62.2
(2.5)
A 		47.8
(0.2)
A 		65.4
(3)
A 		38
C 61.2
(3)
A 		10
(-2.8)
A 		8.1
(-3)
A 		12.9
(-2.5)
A 		53
avr 33
(1.7) 		27.3
(-0.3) 		20
(-3) 		36.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 41.4
(3)
A 		25.5
(0.3)
A 		20.8
(-0.5)
A 		5.8
(-3)
A 		10.4
(-2.2)
A 		38
(2.4)
A 		36
B 9.1
(-2.8)
A 		10.1
(-2.6)
A 		7.6
(-3)
A 		50.1
(3)
A 		14.7
(-2)
A 		47.5
(2.6)
A 		43
C 8.2
(-3)
A 		21.3
(3)
A 		12.4
(-1.1)
A 		14.5
(-0.1)
A 		8.8
(-2.7)
A 		12.9
(-0.8)
A 		13
avr 19.6
(-0.7) 		19
(-0.9) 		13.6
(-2.4) 		23.5
(0.4) 		11.3
(-3) 		32.8
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3.9
(1.8)
A 		2.1
(-1.3)
A 		1.1
(-3)
A 		4.6
(3)
A 		4
B 8.7
(-3)
A 		15.4
(3)
A 		11.1
(-0.9)
A 		13.9
(1.7)
A 		7
C 20.2
(3)
A 		2.9
(-2.8)
A 		2.8
(-2.8)
A 		2.2
(-3)
A 		18
avr 10.9
(3) 		6.8
(-1.2) 		5
(-3) 		6.9
(-1.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.6
(1.7)
A 		9.1
(2.8)
A 		4.5
(-0.7)
A 		1.5
(-3)
A 		3.1
(-1.8)
A 		9.3
(3)
A 		8
B 3.2
(-2.5)
A 		3.3
(-2.4)
A 		1.8
(-3)
A 		13.3
(1.3)
A 		6
(-1.4)
A 		17.7
(3)
A 		16
C 3
(-2.8)
A 		6.5
(3)
A 		3.2
(-2.5)
A 		2.9
(-3)
A 		2.9
(-3)
A 		4.3
(-0.7)
A 		4
avr 4.6
(-1.8) 		6.3
(-0.4) 		3.2
(-3) 		5.9
(-0.8) 		4
(-2.3) 		10.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12509
Sequence Type Exemplar sequence
Representative Public ID B0238.8 NCBI
Target Description B0238.8 /REP_DB=WormBase Gene ID /WP=CE07698 /TR=O16489 /GB=AAB65987.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072007(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072007 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-69) (srt-69) mRNA, complete cds. 10/11 None
B0238.8 ENSEMBL cdna:known chromosome:CEL140:V:5263825:5265434:-1 gene:B0238.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038884 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5263726-5265312(-) 73.04 74.16
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-69
Ensembl B0238.8
Entrez Gene 181872 Entrez gene
SwissProt O16489 EMBL-EBI
WormBase CE37949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65987 Serpentine receptor, class t protein 69 [Caenorhabditis elegans] ref|NP_504408.3| Serpentine Receptor, class T family member (srt-69) [Caenorhabditis elegans] 1.0E-157
blast CAE62645 Hypothetical protein CBG06780 [Caenorhabditis briggsae] 4.0E-85
blast AAB65986 Serpentine receptor, class t protein 70 [Caenorhabditis elegans] ref|NP_504406.1| Serpentine Receptor, class T family member (srt-70) [Caenorhabditis elegans] 3.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.3E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504408.3 7 4-23,43-65,85-107,119-141,165-187,204-226,241-263
B0238.8 7 4-23,43-65,85-107,119-141,165-187,204-226,241-263
Sequence
Target Sequence 
>C. ELEGANS:181796_AT
tttccctttcctatcaaaattgtattattttcactcatgtcgtggatattctttgtaata
gtttctgggagcataactcaaaacatgaagttcagtccaccgtggtggggttacgattat
gagatgccttatgcagaagtatttgattcgatcgaaatatatctgagttttccctgcctg
gcgatttcttatctcgcatatctgattattatatttttgatctattgcaaaaatataaaa
agcacagcaaaatctcgaaaaattgaaatatcaattctccttcaatacacatttgtgaca
acttatataacttttatggtaattatttggcatccaacgcttttttcattgttatcattt
attgatatgagtaacaaaaggaatcaagcaattttaaatggcctttggattattcactgt
tatgttaatccaacgatgttgctgatttttaatagatcaattcgggaagacgttggaaat
gtgctggataatcagatgaaatgcggaaacaaggttaaagcagggatcgtgtcaagtgca
ttaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCTTTCCTATCAAAATTGTAT 654 667 577 Antisense
ATTGTATTATTTTCACTCATGTCGT 422 5 595 Antisense
ACTCATGTCGTGGATATTCTTTGTA 270 101 609 Antisense
GAAGTTCAGTCCACCGTGGTGGGGT 374 333 663 Antisense
GGGGTTACGATTATGAGATGCCTTA 333 497 683 Antisense
AAATATATCTGAGTTTTCCCTGCCT 300 117 731 Antisense
CTGCCTGGCGATTTCTTATCTCGCA 248 237 750 Antisense
ATCAATTCTCCTTCAATACACATTT 105 27 846 Antisense
ATTTGGCATCCAACGCTTTTTTCAT 123 19 901 Antisense
GCCTTTGGATTATTCACTGTTATGT 27 283 977 Antisense
CAGGGATCGTGTCAAGTGCATTAAA 563 207 1097 Antisense
Sequence Source Affymetrix Proprietary Database