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[181795_s_at]

Description F42H11.1 /REP_DB=WormBase Gene ID /WP=CE10330 /TR=P90772 /GB=CAB02820.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 64.1
(-0.4)
A 		27.4
(-2.2)
A 		10
(-3)
A 		136
(3)
A 		126
B 43.3
(-1)
A 		27.3
(-2.5)
A 		22.2
(-3)
A 		84
(3)
A 		62
C 44.5
(-1.9)
A 		11.9
(-3)
A 		20.5
(-2.7)
A 		194.1
(3)
P 		182
avr 50.6
(-1.4) 		22.2
(-2.8) 		17.6
(-3) 		138
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 37.4
(-3)
A 		62.3
(-1.7)
A 		45.3
(-2.6)
A 		51.1
(-2.3)
A 		66.8
(-1.5)
A 		154
(3)
P 		117
B 20
(-2.7)
A 		25.7
(-2.2)
A 		45.5
(-0.5)
A 		16.3
(-3)
A 		79.4
(2.5)
P 		85.2
(3)
P 		69
C 40.8
(-2)
A 		70.4
(0.1)
A 		73.7
(0.4)
A 		26.9
(-3)
A 		84.7
(1.1)
A 		110.6
(3)
P 		84
avr 32.7
(-2.9) 		52.8
(-1.5) 		54.8
(-1.4) 		31.4
(-3) 		77
(0.2) 		116.6
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 23.4
(3)
A 		6
(-2)
A 		2.6
(-3)
A 		19.9
(2)
A 		21
B 13.8
(1.1)
A 		6.8
(-2.2)
A 		5.1
(-3)
A 		17.9
(3)
A 		13
C 14.7
(-0.7)
A 		3.4
(-3)
A 		7.1
(-2.2)
A 		32.7
(3)
P 		29
avr 17.3
(1) 		5.4
(-2.8) 		4.9
(-3) 		23.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.9
(-3)
A 		22.2
(-0)
A 		9.9
(-2.4)
A 		13
(-1.8)
A 		20.2
(-0.4)
A 		37.5
(3)
P 		31
B 7
(-2.4)
A 		8.5
(-2.1)
A 		11.1
(-1.5)
A 		4.3
(-3)
A 		32.3
(3)
P 		31.8
(2.9)
P 		28
C 15.1
(-1.2)
A 		21.5
(0.1)
A 		18.8
(-0.5)
A 		5.4
(-3)
A 		27.4
(1.2)
A 		37
(3)
P 		32
avr 9.7
(-2.5) 		17.4
(-0.9) 		13.3
(-1.8) 		7.6
(-3) 		26.6
(1.1) 		35.4
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181795_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1541
Sequence Type Exemplar sequence
Representative Public ID F42H11.1 NCBI
Target Description F42H11.1 /REP_DB=WormBase Gene ID /WP=CE10330 /TR=P90772 /GB=CAB02820.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060136(11), NM_060137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060136 NCBI Caenorhabditis elegans C36F7.5 (C36F7.5) mRNA, complete cds. 11/11 None
NM_060137 NCBI Caenorhabditis elegans F42H11.1 (F42H11.1) mRNA, complete cds. 11/11 None
SNAP00000041482 ENSEMBL cdna:SNAP chromosome:CEL140:I:9582926:9584147:-1 11/11 None
GENEFINDER00000041485 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9582926:9584147:-1 11/11 None
SNAP00000043165 ENSEMBL cdna:SNAP chromosome:CEL140:I:9585143:9586012:1 11/11 None
C36F7.5 ENSEMBL cdna:known chromosome:CEL140:I:9582926:9584147:-1 gene:C36F7.5 11/11 None
F42H11.1 ENSEMBL cdna:known chromosome:CEL140:I:9584480:9586012:1 gene:F42H11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9584410-9585943(+) 100.0 100.0
chrI:9582856-9701833(-) 90.67 90.67
Public Domain and Genome References
Gene Title

Ensembl C36F7.5
F42H11.1
Entrez Gene 183280 Entrez gene
185688 Entrez gene
SwissProt Q93351 EMBL-EBI
P90772 EMBL-EBI
WormBase CE08609 Wormbase
CE10330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02820 Hypothetical protein F42H11.1 [Caenorhabditis elegans] emb|CAB05721.1| Hypothetical protein F42H11.1 [Caenorhabditis elegans] ref|NP_492538.1| F42H11.1 [Caenorhabditis elegans] 1.0E-94
blast CAB02815 Hypothetical protein C36F7.5 [Caenorhabditis elegans] ref|NP_492537.1| C36F7.5 [Caenorhabditis elegans] 2.0E-88
blast CAB02815 Hypothetical protein C36F7.5 [Caenorhabditis elegans] ref|NP_492537.1| C36F7.5 [Caenorhabditis elegans] 4.0E-71
blast CAB02820 Hypothetical protein F42H11.1 [Caenorhabditis elegans] emb|CAB05721.1| Hypothetical protein F42H11.1 [Caenorhabditis elegans] ref|NP_492538.1| F42H11.1 [Caenorhabditis elegans] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 5.8E-23
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.5E-115
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.7E-21
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.1E-91
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.0E-22
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.1E-21
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.5E-115
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492537.1 1 4-26
NP_492538.1 1 7-29
C36F7.5 1 4-26
F42H11.1 1 7-29
SNAP00000041482 1 4-26
GENEFINDER00000041485 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:181795_S_AT
tcctgctgcaacacctggtggaccaaaagctcctgcaaatatcggtgcaaaagcagcaac
acatgatccaaactaccaaacgctggctggtcttaataacaatgtttttgataaaaagga
tggtggaggagctggtggagcacctgccggaggaaagaaaccacttcagccaatgaacaa
aaatcaaaaagctgctacattggatccaaattatcagacattggcagcagttggcggaga
tgtttttggagctgataagaaggttggaggagctggtgcacctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGCTGCAACACCTGGTGGACCA 88 593 582 Antisense
CCTGGTGGACCAAAAGCTCCTGCAA 53 267 595 Antisense
AAAGCTCCTGCAAATATCGGTGCAA 24 125 607 Antisense
AAACTACCAAACGCTGGCTGGTCTT 344 125 651 Antisense
AACGCTGGCTGGTCTTAATAACAAT 613 143 660 Antisense
GTGGAGCACCTGCCGGAGGAAAGAA 428 489 716 Antisense
GGAAAGAAACCACTTCAGCCAATGA 202 527 733 Antisense
AAAAGCTGCTACATTGGATCCAAAT 78 133 768 Antisense
GACATTGGCAGCAGTTGGCGGAGAT 154 369 798 Antisense
GGCGGAGATGTTTTTGGAGCTGATA 412 541 814 Antisense
AGGTTGGAGGAGCTGGTGCACCTGG 293 57 842 Antisense
Sequence Source Affymetrix Proprietary Database