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[181794_at]

Description R01H2.1 /REP_DB=WormBase Gene ID /WP=CE00728 /TR=Q21631 /GB=AAA50643.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 15.2
(-0.8)
A 		31.4
(3)
A 		5.8
(-3)
A 		11.7
(-1.6)
A 		26
B 53.5
(3)
A 		35.7
(-0.2)
A 		22.1
(-2.6)
A 		20.1
(-3)
A 		33
C 12
(-3)
A 		24.3
(0.4)
A 		33.8
(3)
A 		33.1
(2.8)
A 		22
avr 26.9
(0.8) 		30.5
(3) 		20.6
(-3) 		21.6
(-2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 77.4
(3)
A 		28.8
(-1.4)
A 		14.8
(-2.6)
A 		14.4
(-2.7)
A 		10.7
(-3)
A 		32.2
(-1.1)
A 		67
B 6.2
(-3)
A 		18
(-1.7)
A 		18.8
(-1.6)
A 		9.6
(-2.6)
A 		59.3
(3)
A 		7.4
(-2.9)
A 		53
C 14.6
(3)
A 		8.9
(-3)
A 		14.3
(2.7)
A 		11.9
(0.2)
A 		9.4
(-2.5)
A 		13.7
(2.1)
A 		6
avr 32.7
(3) 		18.6
(-1.1) 		16
(-1.8) 		12
(-3) 		26.5
(1.2) 		17.8
(-1.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.5
(1.5)
A 		6.8
(3)
A 		1.5
(-3)
A 		1.7
(-2.8)
A 		5
B 17.1
(3)
A 		8.8
(-0.9)
A 		5.1
(-2.6)
A 		4.3
(-3)
A 		13
C 4
(-3)
A 		7
(-0.7)
A 		11.8
(3)
A 		5.6
(-1.8)
A 		8
avr 8.9
(3) 		7.5
(1.3) 		6.1
(-0.4) 		3.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14.3
(3)
A 		10.3
(0.8)
A 		3.2
(-3)
A 		3.6
(-2.8)
A 		3.2
(-3)
A 		7.8
(-0.5)
A 		11
B 2.2
(-3)
A 		6
(-2)
A 		4.6
(-2.3)
A 		2.5
(-2.9)
A 		24.1
(3)
A 		2.7
(-2.9)
A 		22
C 5.4
(3)
A 		2.7
(-2.4)
A 		3.6
(-0.6)
A 		2.4
(-3)
A 		3
(-1.8)
A 		4.6
(1.4)
A 		3
avr 7.3
(0.7) 		6.3
(-0.1) 		3.8
(-2.2) 		2.8
(-3) 		10.1
(3) 		5
(-1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7027
Sequence Type Exemplar sequence
Representative Public ID R01H2.1 NCBI
Target Description R01H2.1 /REP_DB=WormBase Gene ID /WP=CE00728 /TR=Q21631 /GB=AAA50643.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066138 NCBI Caenorhabditis elegans R01H2.1 (R01H2.1) mRNA, complete cds. 11/11 None
SNAP00000040674 ENSEMBL cdna:SNAP chromosome:CEL140:III:7062803:7063325:1 10/11 None
R01H2.1 ENSEMBL cdna:known chromosome:CEL140:III:7062806:7063120:1 gene:R01H2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7062803-7063118(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01H2.1
Entrez Gene 187508 Entrez gene
SwissProt Q21631 EMBL-EBI
WormBase CE00728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498539 R01H2.1 [Caenorhabditis elegans] gb|AAA50643.1| Hypothetical protein R01H2.1 [Caenorhabditis elegans] 2.0E-53
blast T27754 hypothetical protein ZK1320.8 - Caenorhabditis elegans 3.0E-38
blast NP_498539 R01H2.1 [Caenorhabditis elegans] gb|AAA50643.1| Hypothetical protein R01H2.1 [Caenorhabditis elegans] 1.0E-23
blast AAK39265 Hypothetical protein R11E3.3 [Caenorhabditis elegans] ref|NP_500640.1| R11E3.3 [Caenorhabditis elegans] 6.0E-22
Sequence
Target Sequence 
>C. ELEGANS:181794_AT
gcaacaagcctatatagccacgctgaaatcttcctcccatccaaacaagaatctggaatc
aagaagaaaagcggagaggaaacccaacagaccaagggagccaccattgaatctagccga
atcaaccaaaaccgtgctgagaggacacagaggttccaaactcaatgctcaaaaagaaaa
ccatacgagattcgtcagggaattcctgagaggagctcctccaaacaggatcctgggaac
aagaccgccagcattgaacatcgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACAAGCCTATATAGCCACGCTG 407 319 28 Antisense
ATATAGCCACGCTGAAATCTTCCTC 556 19 39 Antisense
ATCTTCCTCCCATCCAAACAAGAAT 467 29 55 Antisense
GCGGAGAGGAAACCCAACAGACCAA 636 289 98 Antisense
GACCAAGGGAGCCACCATTGAATCT 317 385 117 Antisense
GAATCTAGCCGAATCAACCAAAACC 96 327 136 Antisense
ACAGAGGTTCCAAACTCAATGCTCA 531 107 174 Antisense
GGGAATTCCTGAGAGGAGCTCCTCC 583 491 225 Antisense
AGCTCCTCCAAACAGGATCCTGGGA 97 81 241 Antisense
GGATCCTGGGAACAAGACCGCCAGC 622 511 255 Antisense
GACCGCCAGCATTGAACATCGAGGA 45 383 270 Antisense
Sequence Source Affymetrix Proprietary Database