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[181793_at]

Description C09E8.3 /REP_DB=WormBase Gene ID /WP=CE19349 /TR=O76555 /GB=AAC26253.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2123
1 2 3 4 range
A 220
(-2.5)
A 		1935
(2.4)
P 		2155.4
(3)
P 		32.9
(-3)
A 		2123
B 252.1
(-2.4)
A 		2036.9
(2.8)
P 		2118.9
(3)
P 		42.1
(-3)
A 		2077
C 199.3
(-2.5)
A 		2089.1
(3)
P 		1967
(2.6)
P 		39.7
(-3)
A 		2049
avr 223.8
(-2.5) 		2020.3
(2.8) 		2080.4
(3) 		38.2
(-3) 		2042

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1004
1 2 3 4 5 6 range
A 113.3
(-3)
A 		1098.2
(3)
P 		683.5
(0.5)
P 		689.9
(0.5)
P 		643.4
(0.2)
P 		328.2
(-1.7)
A 		985
B 94
(-3)
A 		1036.6
(3)
P 		910.4
(2.2)
P 		724.2
(1)
P 		512.7
(-0.3)
P 		266.3
(-1.9)
A 		943
C 172.6
(-3)
A 		942.6
(2.8)
P 		973.2
(3)
P 		686.3
(0.9)
P 		734.5
(1.2)
P 		168.3
(-3)
A 		805
avr 126.6
(-3) 		1025.8
(3) 		855.7
(1.9) 		700.1
(0.8) 		630.2
(0.4) 		254.3
(-2.1) 		899
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 681
1 2 3 4 range
A 80.1
(-2.2)
A 		420
(1.5)
P 		563.5
(3)
P 		4.8
(-3)
A 		559
B 80.4
(-2.1)
A 		503.1
(3)
P 		491
(2.9)
P 		9
(-3)
A 		494
C 66
(-2.5)
A 		600.6
(2.2)
P 		685.6
(3)
P 		6.7
(-3)
A 		679
avr 75.5
(-2.3) 		507.9
(2.2) 		580
(3) 		6.8
(-3) 		573

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 20.9
(-3)
A 		390.6
(3)
P 		148.9
(-0.9)
P 		175
(-0.5)
P 		194.1
(-0.2)
P 		79.9
(-2)
A 		370
B 32.7
(-3)
A 		345
(3)
P 		221.1
(0.6)
P 		191.8
(0.1)
P 		208.3
(0.4)
P 		99.3
(-1.7)
A 		312
C 64
(-2.8)
A 		287.6
(3)
P 		247.7
(2)
P 		138
(-0.9)
P 		237.7
(1.7)
P 		56.3
(-3)
A 		231
avr 39.2
(-3) 		341.1
(3) 		205.9
(0.3) 		168.3
(-0.4) 		213.4
(0.5) 		78.5
(-2.2) 		302
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5920
Sequence Type Exemplar sequence
Representative Public ID C09E8.3 NCBI
Target Description C09E8.3 /REP_DB=WormBase Gene ID /WP=CE19349 /TR=O76555 /GB=AAC26253.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061354 NCBI Caenorhabditis elegans C09E8.3 (C09E8.3) mRNA, complete cds. 11/11 None
SNAP00000011943 ENSEMBL cdna:SNAP chromosome:CEL140:II:546614:551890:1 11/11 None
GENEFINDER00000011946 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:546614:551890:1 11/11 None
C09E8.3 ENSEMBL cdna:known chromosome:CEL140:II:546703:552018:1 gene:C09E8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:546828-551890(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mlt-10
Ensembl C09E8.3
Entrez Gene 173445 Entrez gene
SwissProt O76555 EMBL-EBI
WormBase CE19349 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26253 Hypothetical protein C09E8.3 [Caenorhabditis elegans] ref|NP_493755.1| C09E8.3 [Caenorhabditis elegans] 0.0
blast CAE56543 Hypothetical protein CBG24274 [Caenorhabditis briggsae] 0.0
blast CAI46577 Hypothetical protein W02B8.6 [Caenorhabditis elegans] ref|NP_001022392.1| W02B8.6 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493755.1 4 542-564,571-593,613-635,642-664
C09E8.3 4 542-564,571-593,613-635,642-664
SNAP00000011943 4 546-568,575-597,617-639,646-668
GENEFINDER00000011946 4 546-568,575-597,617-639,646-668
Sequence
Target Sequence 
>C. ELEGANS:181793_AT
atattgagaaggacatccgcgccctcgctgaagccgaaaagttccgagttgctcgccgag
ccgacatcgtctcctctccattcatcctaacccctctcaccttcgcctcggcccctctct
ccaacacattcatcgtcttgtccccactggtcctgtccccaatcaccctgtccccagccg
tcttgggaccaattatcctgtccccttgggtctttgtcccactgattctgtcccctcgtg
tcctctctcccctgattgtcaatcccctcgtcttctctccaatcatcctgtctccactgg
ttctccatccgctgatccttgtcccaggagtgttcaatccgatcattctgtccccattgg
tgttgtccccgttgatcctgtccccacaggtgttcaccccattgatcttgtccccgttcg
ctttgaatcctttgatcttgacacctatggtcggatccccgctgatcctgtccccattcg
tcttgtcgccaattattctgtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTGAGAAGGACATCCGCGCCCT 317 19 1475 Antisense
CGCCCTCGCTGAAGCCGAAAAGTTC 567 255 1494 Antisense
GCCGAAAAGTTCCGAGTTGCTCGCC 95 285 1507 Antisense
CTCCAACACATTCATCGTCTTGTCC 330 235 1593 Antisense
CCAGCCGTCTTGGGACCAATTATCC 100 273 1648 Antisense
TGGGACCAATTATCCTGTCCCCTTG 387 553 1658 Antisense
CTGATCCTTGTCCCAGGAGTGTTCA 400 237 1786 Antisense
GTCCCAGGAGTGTTCAATCCGATCA 651 473 1795 Antisense
AGTGTTCAATCCGATCATTCTGTCC 241 59 1803 Antisense
ATTCGTCTTGTCGCCAATTATTCTG 361 9 1950 Antisense
GTCTTGTCGCCAATTATTCTGTCGC 574 467 1954 Antisense
Sequence Source Affymetrix Proprietary Database