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[181792_s_at]

Description F53H1.4 /REP_DB=WormBase Gene ID /WP=CE17862 /TR=O45075 /GB=AAC02578.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 5.1
(-3)
A 		14.6
(-2.3)
A 		7.3
(-2.8)
A 		86
(3)
A 		81
B 7.1
(-2.8)
A 		7.5
(-2.7)
A 		6
(-3)
A 		36.4
(3)
A 		30
C 7.7
(-2.8)
A 		9.7
(-2.7)
A 		5.5
(-3)
A 		86.4
(3)
A 		81
avr 6.6
(-3) 		10.6
(-2.6) 		6.3
(-3) 		69.6
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 9.8
(-2.2)
A 		7.5
(-2.5)
A 		10.1
(-2.2)
A 		4.1
(-3)
A 		3.9
(-3)
A 		50.5
(3)
A 		47
B 6.4
(-2.8)
A 		4.8
(-3)
A 		8.5
(-2.5)
A 		11.2
(-2.1)
A 		10.7
(-2.2)
A 		48.6
(3)
A 		44
C 6.5
(-2.8)
A 		4.7
(-3)
A 		5.2
(-3)
A 		9.4
(-2.6)
A 		5.9
(-2.9)
A 		75.7
(3)
A 		71
avr 7.6
(-2.8) 		5.7
(-3) 		7.9
(-2.7) 		8.2
(-2.7) 		6.8
(-2.9) 		58.3
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.9
(-3)
A 		3.2
(-2.3)
A 		1.9
(-3)
A 		12.6
(3)
A 		11
B 2.3
(-2.2)
A 		1.9
(-2.5)
A 		1.4
(-3)
A 		7.8
(3)
A 		6
C 2.5
(-2.7)
A 		2.8
(-2.6)
A 		1.9
(-3)
A 		14.6
(3)
A 		13
avr 2.2
(-2.7) 		2.6
(-2.5) 		1.7
(-3) 		11.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.8
(-2.6)
A 		2.7
(-2.1)
A 		2.2
(-2.4)
A 		1
(-3)
A 		1.2
(-2.9)
A 		12.3
(3)
A 		11
B 2.2
(-2.8)
A 		1.6
(-3)
A 		2.1
(-2.8)
A 		3
(-2.5)
A 		4.4
(-2)
A 		18.1
(3)
A 		17
C 2.4
(-2.7)
A 		1.4
(-3)
A 		1.3
(-3)
A 		1.9
(-2.9)
A 		1.9
(-2.9)
A 		25.4
(3)
A 		24
avr 2.1
(-2.9) 		1.9
(-3) 		1.9
(-3) 		2
(-3) 		2.5
(-2.8) 		18.6
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181792_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10893
Sequence Type Exemplar sequence
Representative Public ID F53H1.4 NCBI
Target Description F53H1.4 /REP_DB=WormBase Gene ID /WP=CE17862 /TR=O45075 /GB=AAC02578.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028046 NCBI Caenorhabditis elegans F53H1.4a (F53H1.4) mRNA, complete cds. 11/11 None
SNAP00000013766 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1312127:1336434:1 11/11 None
GENEFINDER00000013783 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1320135:1328577:1 11/11 None
F53H1.4a ENSEMBL cdna:known chromosome:CEL140:IV:1310224:1328210:1 gene:F53H1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182458 5/11 Cross Hyb Matching Probes None
GENEFINDER00000023926 5/11 Cross Hyb Matching Probes None
SNAP00000023924 6/11 Cross Hyb Matching Probes None
CE7X_3.2 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176944 3 1 NM_001028046 181792_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1310229-1328174(+) 91.54 100.0
Public Domain and Genome References
Ensembl F53H1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02578 Hypothetical protein F53H1.4a [Caenorhabditis elegans] ref|NP_001023217.1| F53H1.4a [Caenorhabditis elegans] 0.0
blast CAE68256 Hypothetical protein CBG13933 [Caenorhabditis briggsae] 0.0
blast AAO91716 Hypothetical protein F53H1.4c [Caenorhabditis elegans] ref|NP_001023219.1| F53H1.4c [Caenorhabditis elegans] 1.0E-130
blast CAE68256 Hypothetical protein CBG13933 [Caenorhabditis briggsae] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:181792_S_AT
aacgaaaggccaacgctgcaatgcgagatgtgcttgaatttgagggagtgctgaggcaga
cgcctgccccgccaccgccgaagcggcagaagaccgttgttgtgccggaagtgctggagc
tgttcaactcgatcgaacgtgccaatcctcgactctacaagaccctgcaacaaattcccg
gccaatcccgttcgacacgtaacgctcaacacgagaatcgctctctgccggatattgagc
aagatttggacgtttacacgtctgccgagcagcttcacgagcatttgagccaattcttcc
gtcatgcacgtggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGAAAGGCCAACGCTGCAATGCG 307 145 3704 Antisense
AGGGAGTGCTGAGGCAGACGCCTGC 648 57 3746 Antisense
GCCACCGCCGAAGCGGCAGAAGACC 430 277 3774 Antisense
GTTGTTGTGCCGGAAGTGCTGGAGC 263 437 3799 Antisense
GTGCTGGAGCTGTTCAACTCGATCG 397 479 3814 Antisense
TACAAGACCCTGCAACAAATTCCCG 627 625 3859 Antisense
GTTCGACACGTAACGCTCAACACGA 20 443 3893 Antisense
CTCAACACGAGAATCGCTCTCTGCC 7 229 3908 Antisense
TTTACACGTCTGCCGAGCAGCTTCA 632 671 3956 Antisense
GCAGCTTCACGAGCATTTGAGCCAA 65 315 3972 Antisense
AATTCTTCCGTCATGCACGTGGATA 373 177 3995 Antisense
Sequence Source Affymetrix Proprietary Database