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[181791_at]

Description T06A1.5 /REP_DB=WormBase Gene ID /WP=CE18209 /TR=O61929 /GB=AAC17770.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 81      6grp_total > 66      4grp_total > 24      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 432
1 2 3 4 range
A 235.6
(-3)
P 		351.6
(-1.1)
P 		448.9
(0.5)
P 		604.3
(3)
P 		369
B 234.1
(-3)
P 		467.1
(1)
P 		483.7
(1.3)
P 		585.9
(3)
P 		352
C 251
(-3)
P 		364.8
(-1.4)
P 		545.9
(1.3)
P 		666.3
(3)
P 		415
avr 240.2
(-3) 		394.5
(-0.6) 		492.8
(1) 		618.8
(3) 		379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 201.7
(-2.5)
P 		255.6
(-1)
P 		288.7
(-0.1)
P 		288.6
(-0.1)
P 		184
(-3)
P 		397.4
(3)
P 		213
B 225.7
(-3)
P 		280.2
(-0.7)
P 		288.1
(-0.4)
P 		248.5
(-2)
P 		242.2
(-2.3)
P 		367.7
(3)
P 		142
C 223.4
(-1.4)
P 		256.5
(-0.4)
P 		267
(-0)
P 		175.2
(-3)
P 		249.7
(-0.6)
P 		361.5
(3)
P 		186
avr 216.9
(-3) 		264.1
(-1.2) 		281.3
(-0.6) 		237.4
(-2.2) 		225.3
(-2.7) 		375.5
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 85.8
(-1.6)
P 		76.3
(-3)
P 		117.4
(3)
P 		88.5
(-1.2)
P 		41
B 74.7
(-3)
P 		115.4
(1.9)
P 		112.1
(1.5)
P 		124.9
(3)
P 		50
C 83.1
(-3)
P 		104.9
(-1.8)
P 		190.3
(3)
P 		112.3
(-1.4)
P 		107
avr 81.2
(-3) 		98.9
(-1.2) 		139.9
(3) 		108.6
(-0.2) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 37.2
(-3)
P 		90.9
(2.4)
P 		62.9
(-0.4)
P 		73.2
(0.6)
P 		55.5
(-1.2)
P 		96.8
(3)
P 		60
B 78.5
(-1.9)
P 		93.3
(-0.7)
P 		70
(-2.6)
P 		65.8
(-3)
P 		98.4
(-0.3)
P 		137.1
(3)
P 		71
C 82.8
(0.3)
P 		78.3
(0)
P 		68
(-0.7)
P 		35.2
(-3)
P 		80.8
(0.2)
P 		121
(3)
P 		86
avr 66.2
(-2.2) 		87.5
(-0.1) 		67
(-2.1) 		58.1
(-3) 		78.2
(-1) 		118.3
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15553
Sequence Type Exemplar sequence
Representative Public ID T06A1.5 NCBI
Target Description T06A1.5 /REP_DB=WormBase Gene ID /WP=CE18209 /TR=O61929 /GB=AAC17770.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071133 NCBI Caenorhabditis elegans T06A1.5 (T06A1.5) mRNA, complete cds. 11/11 None
SNAP00000019759 ENSEMBL cdna:SNAP chromosome:CEL140:V:1925756:1940336:1 11/11 None
GENEFINDER00000019763 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1927119:1931140:1 11/11 None
T06A1.5 ENSEMBL cdna:known chromosome:CEL140:V:1927051:1931198:1 gene:T06A1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1927118-1931140(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06A1.5
Entrez Gene 178674 Entrez gene
SwissProt O61929 EMBL-EBI
WormBase CE18209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503534 T06A1.5 [Caenorhabditis elegans] gb|AAC17770.1| Hypothetical protein T06A1.5 [Caenorhabditis elegans] 0.0
blast NP_503789 C31B8.7 [Caenorhabditis elegans] gb|AAG23977.1| Hypothetical protein C31B8.7 [Caenorhabditis elegans] 0.0
blast CAE62374 Hypothetical protein CBG06460 [Caenorhabditis briggsae] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 6.3E-56
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 6.3E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503534.1 1 5-22
T06A1.5 1 5-22
GENEFINDER00000019763 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:181791_AT
gattatcgaggttcccgcaacaaatagcgatgttattgctcaacagatgatggctgtggc
ggactgcttattgagaagccgaacatattcgaaatggtctatttatgcggacattgatga
gagactgataatgactgatgatcgaatgactattaatgggtttttgagaaacgtcaccga
cgaatccattggctccattgcatttccacaacgttggattatgaagcgggagcaaattcc
accaaaattcacaagcgacgctcagattatcgaaaaaatgccaacacgggcgtggcacga
gaccacgagtgctgcgatgaaagggcatccagtttgtaaggatcaagtcagctgctgggc
taaggatattgtgcacaatgagaaagcaatcagaatgctggtccacgaagttgtaaagtt
ctaccctggatatcgagaatggttcttagactcgtcgataggatacatacgacactatcg
cgatgttgatatgcagtcttgggagaagaataacattgcgaatctcatgaaattcggacc
attctccaacacatcctaccctaactcattagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCGAGGTTCCCGCAACAAAT 636 427 819 Antisense
ATGATGGCTGTGGCGGACTGCTTAT 393 45 865 Antisense
GAATCCATTGGCTCCATTGCATTTC 200 331 1000 Antisense
CAACACGGGCGTGGCACGAGACCAC 175 189 1100 Antisense
ACGAGACCACGAGTGCTGCGATGAA 327 93 1115 Antisense
GTAAGGATCAAGTCAGCTGCTGGGC 19 463 1154 Antisense
GTAAAGTTCTACCCTGGATATCGAG 485 461 1231 Antisense
AGAATGGTTCTTAGACTCGTCGATA 490 75 1254 Antisense
CATACGACACTATCGCGATGTTGAT 304 213 1284 Antisense
TGAAATTCGGACCATTCTCCAACAC 191 573 1346 Antisense
ACACATCCTACCCTAACTCATTAGG 558 109 1367 Antisense
Sequence Source Affymetrix Proprietary Database