[Home] | [Total List]

[181790_at]

Description F56F4.3 /REP_DB=WormBase Gene ID /WP=CE11264 /TR=O01843 /GB=AAB54200.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 19.7
(-1.6)
A 		18.7
(-1.7)
A 		5.3
(-3)
A 		65.6
(3)
A 		60
B 5.1
(-3)
A 		69.3
(3)
A 		40.7
(0.3)
A 		55.2
(1.7)
A 		64
C 1.5
(-3)
A 		51.2
(1.5)
A 		1.6
(-3)
A 		67.1
(3)
P 		66
avr 8.8
(-3) 		46.4
(1.2) 		15.9
(-2.2) 		62.6
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 40.1
(0.5)
A 		4.1
(-3)
A 		30.4
(-0.4)
A 		6.3
(-2.8)
A 		48.8
(1.4)
A 		65.2
(3)
A 		61
B 11
(-3)
A 		32.2
(1.6)
A 		35.8
(2.3)
A 		29.4
(1)
A 		24.3
(-0.1)
A 		38.9
(3)
P 		28
C 25.8
(-2.1)
A 		48.8
(0.7)
A 		37.3
(-0.7)
A 		18
(-3)
A 		29.8
(-1.6)
A 		68.6
(3)
P 		51
avr 25.6
(-1.8) 		28.4
(-1.4) 		34.5
(-0.5) 		17.9
(-3) 		34.3
(-0.5) 		57.6
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.2
(1.2)
A 		4.1
(-1)
A 		1.4
(-3)
A 		9.6
(3)
A 		8
B 1.6
(-3)
A 		17.1
(3)
A 		9.4
(0)
A 		11.8
(0.9)
A 		16
C 0.5
(-3)
A 		14.7
(3)
A 		0.6
(-3)
A 		11.3
(1.6)
P 		14
avr 3.1
(-3) 		12
(3) 		3.8
(-2.5) 		10.9
(2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.4
(-0.5)
A 		1.5
(-3)
A 		6.6
(-0.9)
A 		1.6
(-3)
A 		14.7
(2.5)
A 		15.9
(3)
A 		14
B 3.8
(-3)
A 		10.7
(0.9)
A 		8.7
(-0.3)
A 		7.8
(-0.8)
A 		9.9
(0.4)
A 		14.5
(3)
P 		11
C 9.6
(-1.1)
A 		14.9
(0.5)
A 		9.5
(-1.2)
A 		3.6
(-3)
A 		9.6
(-1.1)
A 		22.9
(3)
P 		19
avr 6.9
(-1.8) 		9
(-0.9) 		8.3
(-1.2) 		4.3
(-3) 		11.4
(0.2) 		17.8
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1355
Sequence Type Exemplar sequence
Representative Public ID F56F4.3 NCBI
Target Description F56F4.3 /REP_DB=WormBase Gene ID /WP=CE11264 /TR=O01843 /GB=AAB54200.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059369 NCBI Caenorhabditis elegans F56F4.3 (F56F4.3) mRNA, complete cds. 11/11 None
SNAP00000027761 ENSEMBL cdna:SNAP chromosome:CEL140:I:6149731:6152454:1 9/11 None
GENEFINDER00000027769 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6149731:6152454:1 11/11 None
F56F4.3 ENSEMBL cdna:known chromosome:CEL140:I:6149531:6152486:1 gene:F56F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6149579-6152454(+) 99.91 99.9
Public Domain and Genome References
Gene Title
Ensembl F56F4.3
Entrez Gene 186398 Entrez gene
WormBase CE39021 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491770 F56F4.3 [Caenorhabditis elegans] 0.0
blast AAB54200 Hypothetical protein F56F4.3 [Caenorhabditis elegans] 0.0
blast CAE71219 Hypothetical protein CBG18082 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491770.1 10 136-158,173-195,292-314,324-346,411-433,478-500,521-540,560-582,608-630,634-656
F56F4.3 10 136-158,173-195,292-314,324-346,411-433,478-500,521-540,560-582,608-630,634-656
SNAP00000027761 9 85-107,122-144,241-263,273-295,360-382,420-442,462-484,511-533,538-557
GENEFINDER00000027769 10 85-107,122-144,241-263,273-295,360-382,427-449,470-489,509-531,557-579,583-605
Sequence
Target Sequence 
>C. ELEGANS:181790_AT
taatgcattgcatcatttgttcccaagactattgtatctgaaacagaaaagtgttcgaat
ttgtattatcatggcgacagtaactcttttattatttttatacattttgagtttgccgta
caaacaactagcagttggataccagaaagagctggcaattgacgactatgttgttggatt
ggtgtcaactacagtattcattcaactgatatctgtgtcaattgtatatggatacaaacg
gcttctcatcaactttctaacaatgctgaaacatcatccagtcacttataagcttgtgga
aaaatgccgtgtatttttgtatgtcatgtgggcattctttctcccgatttcctgtttggt
ttcaatttgttcgattatcgtcaaaaagtatcaaatctatcactggccgttggtattgta
cgctgctatcagtgcacttccattgatctacttggcgcgaaagctgaccatgtacatcat
gcgaaaagaatttgtcagtggtctatcacaaactcatcgttggcagcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGCATTGCATCATTTGTTCCCA 697 635 1524 Antisense
TTATCATGGCGACAGTAACTCTTTT 519 669 1589 Antisense
AGAGCTGGCAATTGACGACTATGTT 277 69 1671 Antisense
GCTGAAACATCATCCAGTCACTTAT 197 297 1788 Antisense
ATGTCATGTGGGCATTCTTTCTCCC 152 49 1844 Antisense
GTATCAAATCTATCACTGGCCGTTG 243 445 1911 Antisense
ACTGGCCGTTGGTATTGTACGCTGC 661 95 1925 Antisense
TTGTACGCTGCTATCAGTGCACTTC 595 707 1939 Antisense
TATCAGTGCACTTCCATTGATCTAC 691 655 1950 Antisense
GATCTACTTGGCGCGAAAGCTGACC 5 419 1968 Antisense
ATCACAAACTCATCGTTGGCAGCCT 557 25 2028 Antisense
Sequence Source Affymetrix Proprietary Database