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[181789_at]

Description Y47H9C.8 /REP_DB=WormBase Gene ID /WP=CE20268 /TR=Q9U2B1 /GB=CAB63370.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 310
(1.8)
P 		231.2
(-3)
P 		236.7
(-2.7)
P 		330.1
(3)
P 		99
B 323.2
(3)
P 		190.1
(-3)
P 		211.4
(-2)
P 		316.6
(2.7)
P 		133
C 307.5
(2.6)
P 		269.9
(-0.1)
P 		230.4
(-3)
P 		312.5
(3)
P 		82
avr 313.6
(2.6) 		230.4
(-2.7) 		226.2
(-3) 		319.7
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 275.6
(-1.6)
P 		240.2
(-3)
P 		249.8
(-2.6)
P 		313.6
(-0.1)
P 		292
(-1)
P 		393.8
(3)
P 		154
B 237.3
(-3)
P 		305.4
(-1.4)
P 		253.4
(-2.6)
P 		246.4
(-2.8)
P 		309.5
(-1.3)
P 		499.2
(3)
P 		262
C 245.7
(-2.4)
P 		264.7
(-2)
P 		327.2
(-0.5)
P 		294.6
(-1.2)
P 		221.7
(-3)
P 		471.2
(3)
P 		250
avr 252.9
(-3) 		270.1
(-2.5) 		276.8
(-2.3) 		284.9
(-2) 		274.4
(-2.4) 		454.7
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 112.9
(3)
P 		50.2
(-2.8)
P 		61.9
(-1.7)
P 		48.3
(-3)
P 		65
B 103.1
(3)
P 		46.9
(-3)
P 		49
(-2.8)
P 		67.5
(-0.8)
P 		56
C 101.8
(3)
P 		77.6
(0)
P 		80.3
(0.4)
P 		52.7
(-3)
P 		49
avr 105.9
(3) 		58.2
(-2.8) 		63.7
(-2.1) 		56.2
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 50.8
(-3)
P 		85.4
(1.6)
P 		54.4
(-2.5)
P 		79.5
(0.8)
P 		88.1
(2)
P 		95.9
(3)
P 		45
B 82.6
(-2)
P 		101.7
(-1.1)
P 		61.5
(-3)
P 		65.3
(-2.8)
P 		125.8
(0.1)
P 		186.1
(3)
P 		125
C 91.1
(-1.1)
P 		80.8
(-1.7)
P 		83.3
(-1.5)
P 		59.2
(-3)
P 		71.8
(-2.2)
P 		157.7
(3)
P 		99
avr 74.8
(-2.4) 		89.3
(-1.3) 		66.4
(-3) 		68
(-2.9) 		95.2
(-0.8) 		146.6
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1293
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.8 NCBI
Target Description Y47H9C.8 /REP_DB=WormBase Gene ID /WP=CE20268 /TR=Q9U2B1 /GB=CAB63370.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060614 NCBI Caenorhabditis elegans Y47H9C.8 (Y47H9C.8) mRNA, complete cds. 11/11 None
SNAP00000036887 ENSEMBL cdna:SNAP chromosome:CEL140:I:11902121:11904369:1 10/11 None
Y47H9C.8 ENSEMBL cdna:known chromosome:CEL140:I:11902060:11904369:1 gene:Y47H9C.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036906 7/11 Cross Hyb Matching Probes None
GENEFINDER00000036900 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11902051-11904300(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.8
Entrez Gene 173068 Entrez gene
SwissProt Q9U2B1 EMBL-EBI
WormBase CE20268 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63370 Hypothetical protein Y47H9C.8 [Caenorhabditis elegans] ref|NP_493015.1| Y47H9C.8 [Caenorhabditis elegans] 0.0
blast CAB63370 Hypothetical protein Y47H9C.8 [Caenorhabditis elegans] ref|NP_493015.1| Y47H9C.8 [Caenorhabditis elegans] 1.0E-105
blast CAE69610 Hypothetical protein CBG15841 [Caenorhabditis briggsae] 1.0E-73
blast CAE64377 Hypothetical protein CBG09064 [Caenorhabditis briggsae] 1.0E-33
blast CAE69610 Hypothetical protein CBG15841 [Caenorhabditis briggsae] 5.0E-25
blast CAE64377 Hypothetical protein CBG09064 [Caenorhabditis briggsae] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:181789_AT
tactttgctgtggcatgccagccaaaatgcgcaatttggcactacagcctcagacaaagc
ggtacttcgcacaaaaaatggcttcaggacattccaccgcatgttgtgcacactttgctc
catttcctgatctgcctggccggacttggagccccggagctcgaccaaactttcgaagaa
gctaccgattctagcgactacgtggagtctcttggcgacacaaatggagcccgtgaggtg
gcatttgagactctaaagtcgacccgtgaacaactttgctcgaaattccgacaatgtgtg
actgatgctttgaatgaagcccgagaaatgccgtataacactgtcacaagagagcttatg
gcgcctccgcgcggaaaaccagtggatatgcatcattgtgtgacgtggcgccagtacgaa
agcctcatcagacgatgcgatacgaatccgtcgaaagagaatttagaggcgaaacaagac
ttggacttcaaactcatgttcacaatctaccagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTTGCTGTGGCATGCCAGCCAA 146 645 625 Antisense
GCGCAATTTGGCACTACAGCCTCAG 218 289 653 Antisense
ACAGCCTCAGACAAAGCGGTACTTC 28 109 668 Antisense
CATGTTGTGCACACTTTGCTCCATT 461 209 724 Antisense
CTACCGATTCTAGCGACTACGTGGA 100 225 806 Antisense
TACGTGGAGTCTCTTGGCGACACAA 322 647 823 Antisense
CGACCCGTGAACAACTTTGCTCGAA 491 251 884 Antisense
CACAAGAGAGCTTATGGCGCCTCCG 272 195 969 Antisense
TGCATCATTGTGTGACGTGGCGCCA 255 579 1013 Antisense
GTGGCGCCAGTACGAAAGCCTCATC 154 493 1029 Antisense
ACTCATGTTCACAATCTACCAGCCA 424 99 1116 Antisense
Sequence Source Affymetrix Proprietary Database