[Home] | [Total List]

[181788_at]

Description B0205.8 /REP_DB=WormBase Gene ID /WP=CE17322 /TR=O61743 /GB=AAC16994.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 74      4grp_high_8_8 > 12      6grp_total > 65      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 67.9
(-3)
P 		108.7
(-1.1)
P 		73.7
(-2.7)
P 		199
(3)
P 		131
B 140.6
(2.8)
P 		69.3
(-3)
P 		81.2
(-2)
P 		142.7
(3)
P 		73
C 72.3
(-3)
M 		84.5
(-2.4)
P 		74.5
(-2.9)
P 		200.1
(3)
P 		128
avr 93.6
(-2) 		87.5
(-2.4) 		76.5
(-3) 		180.6
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 89.9
(-0.1)
M 		65.1
(-2.4)
P 		124
(3)
P 		103.6
(1.1)
P 		58.1
(-3)
A 		99.4
(0.8)
P 		66
B 86.5
(-0.7)
P 		65.9
(-3)
P 		120.2
(3)
P 		97.7
(0.5)
P 		84
(-1)
P 		103.4
(1.1)
P 		54
C 93.4
(-0.5)
P 		101.1
(-0.1)
P 		79.8
(-1.2)
P 		119.8
(0.9)
P 		47.5
(-3)
M 		157.5
(3)
P 		110
avr 89.9
(-0.2) 		77.4
(-1.5) 		108
(1.7) 		107
(1.6) 		63.2
(-3) 		120.1
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 24.7
(0.3)
P 		23.6
(-0.4)
P 		19.3
(-3)
P 		29.1
(3)
P 		10
B 44.8
(3)
P 		17.1
(-3)
P 		18.8
(-2.6)
P 		30.4
(-0.1)
P 		28
C 23.9
(-3)
M 		24.3
(-2.8)
P 		26
(-1.7)
P 		33.7
(3)
P 		10
avr 31.1
(3) 		21.7
(-2.8) 		21.4
(-3) 		31.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 16.6
(-3)
M 		23.2
(0.8)
P 		27
(3)
P 		26.3
(2.6)
P 		17.5
(-2.5)
A 		24.2
(1.4)
P 		10
B 30.1
(-0.1)
P 		21.9
(-3)
P 		29.2
(-0.4)
P 		25.9
(-1.6)
P 		34.1
(1.4)
P 		38.6
(3)
P 		17
C 34.6
(0.1)
P 		30.8
(-0.5)
P 		20.3
(-2.2)
P 		24.1
(-1.6)
P 		15.4
(-3)
M 		52.7
(3)
P 		37
avr 27.1
(-1.2) 		25.3
(-1.9) 		25.5
(-1.8) 		25.4
(-1.9) 		22.3
(-3) 		38.5
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1519
Sequence Type Exemplar sequence
Representative Public ID B0205.8 NCBI
Target Description B0205.8 /REP_DB=WormBase Gene ID /WP=CE17322 /TR=O61743 /GB=AAC16994.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060407 NCBI Caenorhabditis elegans B0205.8 (B0205.8) mRNA, complete cds. 11/11 None
SNAP00000024666 ENSEMBL cdna:SNAP chromosome:CEL140:I:10737146:10738339:-1 11/11 None
GENEFINDER00000024680 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10737146:10738339:-1 11/11 None
B0205.8 ENSEMBL cdna:known chromosome:CEL140:I:10737080:10738355:-1 gene:B0205.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10737076-10738270(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0205.8
Entrez Gene 172976 Entrez gene
SwissProt O61743 EMBL-EBI
WormBase CE17322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16994 Hypothetical protein B0205.8 [Caenorhabditis elegans] ref|NP_492808.1| B0205.8 [Caenorhabditis elegans] 1.0E-23
blast CAE67353 Hypothetical protein CBG12816 [Caenorhabditis briggsae] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:181788_AT
gtacaagcttggatgaacttttcaaagatcgatattctcagaacgatgaacgatataaga
aaatgtctgaaactggattcgaaccagtgatcgttgttcatccatgggagcccagaagaa
ataataactatcgaaatcgcggaaatttcggcggaggacgtggtggtggatatcagcaca
gggacaattcaaatcgaggcggttgggttccacgaggaggtggtcaacgtggaggatatc
gaggtggatggcaggatcgtggggggcatcgtggtggtggtggatggcaagatcgaggtg
gacagcgacaaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAAGCTTGGATGAACTTTTCAA 286 459 23 Antisense
AACCAGTGATCGTTGTTCATCCATG 670 147 104 Antisense
GTTGTTCATCCATGGGAGCCCAGAA 261 437 115 Antisense
GGAAATTTCGGCGGAGGACGTGGTG 437 525 163 Antisense
CGTGGTGGTGGATATCAGCACAGGG 123 245 181 Antisense
TCAGCACAGGGACAATTCAAATCGA 162 625 195 Antisense
TCAAATCGAGGCGGTTGGGTTCCAC 673 625 211 Antisense
GCGGTTGGGTTCCACGAGGAGGTGG 165 287 221 Antisense
CGAGGAGGTGGTCAACGTGGAGGAT 370 249 235 Antisense
TGGATGGCAGGATCGTGGGGGGCAT 524 513 267 Antisense
GATCGAGGTGGACAGCGACAACCGT 276 413 313 Antisense
Sequence Source Affymetrix Proprietary Database