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[181787_at] 7TM chemoreceptor, srt family

Description F47D2.3 /REP_DB=WormBase Gene ID /WP=CE10690 /TR=Q22981 /GB=AAG24113.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 01      6grp_cgc > 19      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 32.9
(-0.6)
A 		7.1
(-3)
A 		42.9
(0.3)
A 		72.2
(3)
A 		65
B 4.1
(-3)
A 		21.4
(-1.6)
A 		26.6
(-1.2)
A 		77.5
(3)
A 		73
C 26.6
(-2.6)
A 		21.4
(-3)
A 		24.9
(-2.7)
A 		92.1
(3)
A 		71
avr 21.2
(-2.6) 		16.6
(-3) 		31.5
(-1.6) 		80.6
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 5.7
(-2.2)
A 		1.4
(-3)
A 		16.4
(-0.1)
A 		4.9
(-2.3)
A 		4.6
(-2.4)
A 		32
(3)
A 		31
B 23.6
(3)
A 		21.6
(2.4)
A 		2.8
(-3)
A 		7.7
(-1.6)
A 		8.5
(-1.4)
A 		5.8
(-2.1)
A 		21
C 31.7
(1)
A 		46
(3)
A 		2.5
(-3)
A 		36.7
(1.7)
A 		29.2
(0.7)
A 		23.8
(-0.1)
A 		44
avr 20.3
(2) 		23
(3) 		7.2
(-3) 		16.4
(0.5) 		14.1
(-0.4) 		20.5
(2.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12
(3)
A 		1.6
(-3)
A 		11.2
(2.5)
A 		10.6
(2.2)
A 		10
B 1.3
(-3)
A 		5.3
(-1.4)
A 		6.2
(-1.1)
A 		16.5
(3)
A 		15
C 8.8
(-1.3)
A 		6.2
(-3)
A 		8.7
(-1.4)
A 		15.5
(3)
A 		9
avr 7.4
(-1.2) 		4.4
(-3) 		8.7
(-0.4) 		14.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		0.5
(-3)
A 		3.6
(-0.5)
A 		1.2
(-2.4)
A 		1.4
(-2.3)
A 		7.8
(3)
A 		7
B 8.2
(3)
A 		7.2
(2.2)
A 		0.7
(-3)
A 		2
(-2)
A 		3.5
(-0.8)
A 		2.2
(-1.8)
A 		8
C 11.7
(2)
A 		14
(3)
A 		0.6
(-3)
A 		7.4
(0)
A 		9.5
(1)
A 		8
(0.3)
A 		13
avr 7
(2.8) 		7.2
(3) 		1.6
(-3) 		3.5
(-1) 		4.8
(0.4) 		6
(1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14870
Sequence Type Exemplar sequence
Representative Public ID F47D2.3 NCBI
Target Description F47D2.3 /REP_DB=WormBase Gene ID /WP=CE10690 /TR=Q22981 /GB=AAG24113.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071774 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-3) (srt-3) mRNA, complete cds. 11/11 None
SNAP00000032760 ENSEMBL cdna:SNAP chromosome:CEL140:V:4257771:4259989:-1 11/11 None
GENEFINDER00000032779 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4257771:4260004:-1 11/11 None
F47D2.3 ENSEMBL cdna:known chromosome:CEL140:V:4257771:4260004:-1 gene:F47D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4257770-4260004(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-3
Ensembl F47D2.3
Entrez Gene 185924 Entrez gene
SwissProt Q22981 EMBL-EBI
WormBase CE37916 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24113 Serpentine receptor, class t protein 3 [Caenorhabditis elegans] ref|NP_504175.2| Serpentine Receptor, class T family member (srt-3) [Caenorhabditis elegans] 0.0
blast AAG24113 Serpentine receptor, class t protein 3 [Caenorhabditis elegans] ref|NP_504175.2| Serpentine Receptor, class T family member (srt-3) [Caenorhabditis elegans] 1.0E-165
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 1.0E-127
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 1.0E-124
blast AAB69893 Hypothetical protein C29G2.4 [Caenorhabditis elegans] ref|NP_503706.2| Serpentine Receptor, class T family member (srt-4) [Caenorhabditis elegans] 1.0E-114
blast AAB69893 Hypothetical protein C29G2.4 [Caenorhabditis elegans] ref|NP_503706.2| Serpentine Receptor, class T family member (srt-4) [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.1E-117
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.7E-50
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.3E-30
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.1E-117
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504175.2 7 36-58,70-92,107-129,150-172,204-226,238-260,270-292
F47D2.3 7 36-58,70-92,107-129,150-172,204-226,238-260,270-292
SNAP00000032760 5 33-55,68-90,105-127,147-169,189-208
GENEFINDER00000032779 7 38-60,73-95,110-132,153-175,207-229,241-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:181787_AT
ggaacttcattctgccagtatccacgatttttcttcatagttggtgctattgccgtaggc
gcttggtttggtgactgcttagcatgtgttctactcgctattgaaagatgtgttgaagtg
aattccaactttttgtttgcattcattttcggaagacgcgttttctattttgtcaccatt
attttaattgtgtatgcaatttatggtatggtttttacggtgccagtaatttttacgcca
gagtttggaagctatttttatgatccgatggtcggaaaggatataatattacaaggagtc
gttctctgcttctttcacggtgttactggaataattcacgcctacatgcaatacttctat
tcaccatcatggatgattgttcttgcacaaatagtatggcaatggagcaatggatgtctg
agtattgtatacttaaccctcaatcgaaccgttcgaaatgcagtcatcaaaatgctgatt
ccaaaaaagatccgactacgtcatggatggcacattggagcagatgagcatgtggcgctg
gaaaaagctgtcaataatgcaacttccggagtaaatgcagttgcctgtactgtcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTTCATTCTGCCAGTATCCAC 590 529 298 Antisense
GTATCCACGATTTTTCTTCATAGTT 558 455 315 Antisense
TTGCCGTAGGCGCTTGGTTTGGTGA 228 697 347 Antisense
GACTGCTTAGCATGTGTTCTACTCG 415 375 370 Antisense
ACGCGTTTTCTATTTTGTCACCATT 635 89 453 Antisense
TACAAGGAGTCGTTCTCTGCTTCTT 73 643 587 Antisense
TCTGCTTCTTTCACGGTGTTACTGG 224 607 602 Antisense
TCACGCCTACATGCAATACTTCTAT 76 627 633 Antisense
AATACTTCTATTCACCATCATGGAT 224 173 647 Antisense
GTATACTTAACCCTCAATCGAACCG 625 443 724 Antisense
AAATGCAGTTGCCTGTACTGTCGGC 676 117 870 Antisense
Sequence Source Affymetrix Proprietary Database