[Home] | [Total List]

[181786_at]

Description C25H3.6 /REP_DB=WormBase Gene ID /WP=CE27094 /TR=Q18181 /GB=AAK31458.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.9
(-3)
A 		10
(-1.1)
A 		10.1
(-1.1)
A 		14.7
(3)
A 		7
B 6.6
(-0.7)
A 		4.9
(-3)
A 		8
(1.1)
A 		9.4
(3)
A 		5
C 8.7
(-1.6)
A 		8.3
(-2)
A 		7.1
(-3)
A 		14.2
(3)
A 		7
avr 7.7
(-3) 		7.7
(-3) 		8.4
(-2.2) 		12.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 12.1
(-1.2)
A 		5.6
(-3)
A 		12.4
(-1.1)
A 		12.3
(-1.2)
A 		23.4
(1.9)
A 		27.6
(3)
A 		22
B 8.3
(-2.5)
A 		7.8
(-2.9)
A 		10.8
(-0.4)
A 		7.7
(-3)
A 		13.4
(1.8)
A 		14.8
(3)
A 		7
C 11.3
(-1)
A 		9
(-1.8)
A 		5.9
(-3)
A 		6.3
(-2.9)
A 		21.9
(3)
A 		12.6
(-0.5)
A 		16
avr 10.6
(-1.5) 		7.5
(-3) 		9.7
(-1.9) 		8.8
(-2.4) 		19.6
(3) 		18.3
(2.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.9
(3)
A 		2.2
(-2.3)
A 		2.6
(0.8)
A 		2.1
(-3)
A 		1
B 2.1
(3)
A 		1.2
(-3)
A 		1.9
(1.7)
A 		2
(2.3)
A 		1
C 2.9
(3)
A 		2.4
(-3)
A 		2.5
(-1.8)
A 		2.4
(-3)
A 		1
avr 2.6
(3) 		1.9
(-3) 		2.3
(0.4) 		2.2
(-0.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.2
(-2.8)
A 		2
(-3)
A 		2.7
(-2.2)
A 		3.1
(-1.7)
A 		7.1
(3)
A 		6.7
(2.5)
A 		5
B 2.9
(-1.6)
A 		2.6
(-2.1)
A 		2.6
(-2.1)
A 		2.1
(-3)
A 		5.4
(2.8)
A 		5.5
(3)
A 		3
C 4.2
(0)
A 		2.7
(-1.6)
A 		1.5
(-2.8)
A 		1.3
(-3)
A 		7.1
(3)
A 		4.2
(0)
A 		6
avr 3.1
(-1.7) 		2.4
(-2.7) 		2.3
(-2.9) 		2.2
(-3) 		6.5
(3) 		5.5
(1.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5580
Sequence Type Exemplar sequence
Representative Public ID C25H3.6 NCBI
Target Description C25H3.6 /REP_DB=WormBase Gene ID /WP=CE27094 /TR=Q18181 /GB=AAK31458.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026813, NM_001026812
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026812 NCBI Caenorhabditis elegans C25H3.15 (C25H3.15) mRNA, complete cds. None
SNAP00000016802 ENSEMBL cdna:SNAP chromosome:CEL140:II:5666280:5667381:1 None
GENEFINDER00000016817 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5665085:5666172:1 None
NM_001026813 NCBI Caenorhabditis elegans C25H3.16 (C25H3.16) mRNA, complete cds. None
GENEFINDER00000016819 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5666280:5666732:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170997 1/11 Cross Hyb Matching Probes B 
C25H3.6a 1/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5662329-5666729(+) 97.6 100.0
Public Domain and Genome References
Gene Title

Entrez Gene 3565066 Entrez gene
3565401 Entrez gene
WormBase CE38687 Wormbase
CE38688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55856 Hypothetical protein C25H3.15 [Caenorhabditis elegans] ref|NP_001021983.1| C25H3.15 [Caenorhabditis elegans] 1.0E-93
blast CAE59165 Hypothetical protein CBG02471 [Caenorhabditis briggsae] 8.0E-78
blast AAY55856 Hypothetical protein C25H3.15 [Caenorhabditis elegans] ref|NP_001021983.1| C25H3.15 [Caenorhabditis elegans] 6.0E-75
blast CAE59165 Hypothetical protein CBG02471 [Caenorhabditis briggsae] 7.0E-69
blast AAY55857 Hypothetical protein C25H3.16 [Caenorhabditis elegans] ref|NP_001021984.1| C25H3.16 [Caenorhabditis elegans] 1.0E-62
blast T15624 hypothetical protein C25H3.6 - Caenorhabditis elegans 1.0E-62
blast CAE59166 Hypothetical protein CBG02472 [Caenorhabditis briggsae] 3.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021984.1 1 28-50
SNAP00000016802 1 28-50
GENEFINDER00000016819 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:181786_AT
tggagagaaacgtcccactgcttttattaaaagtggatgcagctccaccgagcggctcat
ttttttggagtcaaaaagatcccatcaaatagcccttcttgtgtccagcactacacttat
aatctggaacgaagacgccaagactgtctcttctcttgtgccgaataaattattaatagt
tttaaacttttacaactcatatcaatcattcaatatggcaattgttgcaccaagacaggc
tccagactatgatccagctttcagtgataaatataaactctctgtgacagttgaactttc
attgttcctattcattggccttacgatgggattcattttgattatggtcggaattatggc
ggccttccgttggtattatcgtagattgctcgagattcggctcaaggagcttcagactgc
ctatgagccaggaagaatctttcttatcgaaaatgctggcaacgaaatcgtccaagtaca
tcttggtccattgtcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGAGAAACGTCCCACTGCTTTT 630 549 1395 Antisense
CTCCACCGAGCGGCTCATTTTTTTG 353 235 1437 Antisense
AAAGATCCCATCAAATAGCCCTTCT 371 123 1469 Antisense
GAAGACGCCAAGACTGTCTCTTCTC 550 339 1525 Antisense
GTCTCTTCTCTTGTGCCGAATAAAT 601 467 1540 Antisense
TTGTTGCACCAAGACAGGCTCCAGA 188 705 1616 Antisense
GGCTCCAGACTATGATCCAGCTTTC 658 539 1632 Antisense
TTGTTCCTATTCATTGGCCTTACGA 571 703 1696 Antisense
CGGCCTTCCGTTGGTATTATCGTAG 406 241 1754 Antisense
GAGCTTCAGACTGCCTATGAGCCAG 316 389 1801 Antisense
AAGTACATCTTGGTCCATTGTCGCC 363 157 1868 Antisense
Sequence Source Affymetrix Proprietary Database