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[181785_at]

Description ZC308.4 /REP_DB=WormBase Gene ID /WP=CE15165 /TR=O17085 /GB=AAB70344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 3
(-3)
A 		19.5
(-1.5)
A 		16.3
(-1.8)
A 		68.7
(3)
A 		66
B 7.5
(-2.1)
A 		4.2
(-3)
A 		15.2
(-0.1)
A 		27
(3)
A 		23
C 2.9
(-3)
A 		27.2
(1.1)
A 		18.2
(-0.4)
A 		38.7
(3)
A 		36
avr 4.5
(-3) 		17
(-1.1) 		16.6
(-1.2) 		44.8
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 7.4
(-3)
A 		10.9
(-3)
A 		55.9
(-2.5)
P 		63.9
(-2.4)
P 		247.6
(-0.3)
P 		538.4
(3)
P 		531
B 5
(-3)
A 		25.6
(-2.8)
A 		27.9
(-2.8)
A 		62
(-2.5)
P 		317.2
(-0)
P 		632.4
(3)
P 		627
C 4.3
(-3)
A 		18.1
(-2.8)
A 		35.6
(-2.7)
A 		61.4
(-2.4)
A 		289
(0.2)
P 		541.1
(3)
P 		537
avr 5.6
(-3) 		18.2
(-2.9) 		39.8
(-2.6) 		62.4
(-2.4) 		284.6
(-0) 		570.6
(3) 		565
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		4.2
(-0.9)
A 		4.3
(-0.9)
A 		10.1
(3)
A 		9
B 2.4
(-1.3)
A 		1
(-3)
A 		3.5
(0.1)
A 		5.8
(3)
A 		5
C 1
(-3)
A 		7.8
(3)
A 		6.3
(1.7)
A 		6.5
(1.9)
A 		7
avr 1.5
(-3) 		4.3
(-0.2) 		4.7
(0.2) 		7.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 1.4
(-3)
A 		3.9
(-2.9)
A 		12.2
(-2.5)
P 		16.2
(-2.3)
P 		74.7
(0.4)
P 		131.1
(3)
P 		130
B 1.7
(-3)
A 		8.5
(-2.8)
A 		6.8
(-2.9)
A 		16.4
(-2.6)
P 		128.9
(0.3)
P 		235.8
(3)
P 		234
C 1.6
(-3)
A 		5.5
(-2.9)
A 		9.1
(-2.7)
A 		12.4
(-2.6)
A 		93.5
(0.1)
P 		181.1
(3)
P 		180
avr 1.6
(-3) 		6
(-2.9) 		9.4
(-2.7) 		15
(-2.6) 		99
(0.2) 		182.7
(3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2517
Sequence Type Exemplar sequence
Representative Public ID ZC308.4 NCBI
Target Description ZC308.4 /REP_DB=WormBase Gene ID /WP=CE15165 /TR=O17085 /GB=AAB70344.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059438 NCBI Caenorhabditis elegans ZC308.4 (ZC308.4) mRNA, complete cds. 11/11 None
SNAP00000042585 ENSEMBL cdna:SNAP chromosome:CEL140:I:6376441:6377631:1 9/11 None
GENEFINDER00000042593 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6376441:6379862:1 10/11 None
ZC308.4 ENSEMBL cdna:known chromosome:CEL140:I:6376441:6377631:1 gene:ZC308.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6376369-6377560(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC308.4
Entrez Gene 172336 Entrez gene
SwissProt O17085 EMBL-EBI
WormBase CE15165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70344 Hypothetical protein ZC308.4 [Caenorhabditis elegans] ref|NP_491839.1| ZC308.4 [Caenorhabditis elegans] 0.0
blast AAB70344 Hypothetical protein ZC308.4 [Caenorhabditis elegans] ref|NP_491839.1| ZC308.4 [Caenorhabditis elegans] 1.0E-160
blast T32273 hypothetical protein ZC308.3 - Caenorhabditis elegans 1.0E-156
blast AAB70342 Defective in germ line development protein 2, isoform a [Caenorhabditis elegans] ref|NP_491842.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] gb|AAM94369.1| regulatory cytoplasmic polyA polymerase [Caenorhabditis elegans] 1.0E-149
blast AAB70344 Hypothetical protein ZC308.4 [Caenorhabditis elegans] ref|NP_491839.1| ZC308.4 [Caenorhabditis elegans] 1.0E-142
blast CAE67174 Hypothetical protein CBG12606 [Caenorhabditis briggsae] 1.0E-68
blast CAE67174 Hypothetical protein CBG12606 [Caenorhabditis briggsae] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:181785_AT
gaattgttcagcatgtcaaactcagggaaagtgacagtccatttcgaaaccttcaaagcc
taaaaattccatccatttcttggactctaaacggagctagagaatatcctcaattcatca
atttccaaaaccatgtttttgagaaattagaattaatcaattacgaatcgatcgtattga
cggaaacccaggtgaaaagttgcaaacaccttgtactaaaaaaggaaacaatttaccagg
agtacaccgttggaaacgagaacagtgccatcagaaatttctattgtatcctgagcaata
tgaagttggaattggttttgggactgaattacgtcgaatcttttattctgctttgtaacc
gtcttcttctcgacacccttcacataggatcatctgtcactgcaattttcatcaaggaac
ctcttctaaacgtttggagaaccctattggaacgatatgaagactcgcgaggaactttta
tgggttccggacaccgaaagtgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGTTCAGCATGTCAAACTCAG 476 323 374 Antisense
GTGACAGTCCATTTCGAAACCTTCA 154 483 404 Antisense
AATTCCATCCATTTCTTGGACTCTA 61 177 438 Antisense
ACAATTTACCAGGAGTACACCGTTG 25 105 601 Antisense
GGAAACGAGAACAGTGCCATCAGAA 534 527 625 Antisense
TTTATTCTGCTTTGTAACCGTCTTC 109 675 715 Antisense
TCTCGACACCCTTCACATAGGATCA 605 611 741 Antisense
GGATCATCTGTCACTGCAATTTTCA 369 511 760 Antisense
TCAAGGAACCTCTTCTAAACGTTTG 158 631 785 Antisense
AGACTCGCGAGGAACTTTTATGGGT 97 71 834 Antisense
GGGTTCCGGACACCGAAAGTGTGCT 387 493 855 Antisense
Sequence Source Affymetrix Proprietary Database