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[181783_at]

Description F56H6.11 /REP_DB=WormBase Gene ID /WP=CE25911 /TR=O45589 /GB=CAB04500.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.7
(-3)
A 		4.3
(-0.3)
A 		7.5
(3)
A 		4.3
(-0.3)
A 		6
B 7.1
(1.1)
A 		9.5
(3)
A 		2.5
(-2.7)
A 		2.1
(-3)
A 		7
C 5.8
(-3)
A 		6.4
(-1.6)
A 		8.3
(3)
A 		7.5
(1.1)
A 		3
avr 4.9
(-2.1) 		6.7
(3) 		6.1
(1.3) 		4.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 10.6
(3)
A 		4.2
(-2.1)
A 		3.8
(-2.4)
A 		4.8
(-1.6)
A 		3.2
(-2.8)
A 		3
(-3)
A 		8
B 7.3
(2.4)
A 		6.4
(0.9)
A 		7.7
(3)
A 		7.4
(2.5)
A 		6.5
(1.1)
A 		3.9
(-3)
A 		4
C 4.8
(-1.2)
A 		7.6
(3)
A 		4.4
(-1.8)
A 		3.7
(-2.9)
A 		4
(-2.4)
A 		3.6
(-3)
A 		4
avr 7.6
(3) 		6.1
(0.8) 		5.3
(-0.4) 		5.3
(-0.4) 		4.6
(-1.4) 		3.5
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.6
(-3)
A 		0.9
(-1.7)
A 		2
(3)
A 		0.6
(-3)
A 		1
B 2.3
(2.7)
A 		2.4
(3)
A 		0.6
(-2.4)
A 		0.4
(-3)
A 		2
C 1.9
(-0.8)
A 		1.8
(-1.1)
A 		2.9
(3)
A 		1.3
(-3)
A 		2
avr 1.6
(1.8) 		1.7
(2.4) 		1.8
(3) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2
(3)
A 		1.5
(0.7)
A 		0.8
(-2.5)
A 		1.2
(-0.7)
A 		1
(-1.6)
A 		0.7
(-3)
A 		1
B 2.6
(2.5)
A 		2.1
(0)
A 		1.9
(-1)
A 		2
(-0.5)
A 		2.7
(3)
A 		1.5
(-3)
A 		1
C 1.8
(1.1)
A 		2.3
(3)
A 		1.1
(-1.5)
A 		0.7
(-3)
A 		1.3
(-0.8)
A 		1.2
(-1.1)
A 		2
avr 2.1
(3) 		2
(2.4) 		1.3
(-1.8) 		1.3
(-1.8) 		1.7
(0.6) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2431
Sequence Type Exemplar sequence
Representative Public ID F56H6.11 NCBI
Target Description F56H6.11 /REP_DB=WormBase Gene ID /WP=CE25911 /TR=O45589 /GB=CAB04500.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060710 NCBI Caenorhabditis elegans F56H6.11 (F56H6.11) mRNA, complete cds. 11/11 None
GENEFINDER00000044663 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12315169:12318990:1 11/11 None
SNAP00000044660 ENSEMBL cdna:SNAP chromosome:CEL140:I:12315853:12318528:1 11/11 None
F56H6.11 ENSEMBL cdna:known chromosome:CEL140:I:12315853:12318528:1 gene:F56H6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12315783-12318459(+) 98.54 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.11
Entrez Gene 186421 Entrez gene
SwissProt O45589 EMBL-EBI
WormBase CE25911 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04500 Hypothetical protein F56H6.11 [Caenorhabditis elegans] ref|NP_493111.1| F56H6.11 [Caenorhabditis elegans] 0.0
blast CAB04501 Hypothetical protein F56H6.12 [Caenorhabditis elegans] ref|NP_493112.1| F56H6.12 [Caenorhabditis elegans] 0.0
blast AAB95169 Hypothetical protein F37C4.3 [Caenorhabditis elegans] ref|NP_500431.1| F37C4.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493111.1 9 7-24,28-50,73-92,132-154,166-188,192-209,250-272,329-346,353-375
F56H6.11 9 7-24,28-50,73-92,132-154,166-188,192-209,250-272,329-346,353-375
GENEFINDER00000044663 9 29-46,50-72,95-114,154-176,188-210,214-231,272-294,351-368,375-397
SNAP00000044660 9 7-24,28-50,73-92,132-154,166-188,192-209,250-272,329-346,353-375
Sequence
Target Sequence 
>C. ELEGANS:181783_AT
aattgctgcgtatggctgtgagccattgtaccctagcttattacttgacagatgcaagtc
caacctggaaactttttcgaaaagcattgaagacgagaagccggattttgtgtttatatt
cacacgacacatctccattggagagccatttgcttccaacgtcacaagttttgaagaaga
ttttatctatcaaactatgaagcgacaaatgttaaaatatattaaaaatattaaatataa
gctctacatattagacgctataccccgaaaccataatattgtatcaaaaattgcaccaat
gctgaaaagtggagttgatcccgtgaaaattgataaaattctcttcaacgccgagttcta
tgaaatggctcgaaagcgacatgcacaactaatcaaggattgcaatggacaatgcgagct
tgttgattacctcccggagttttacaaccagaaaaccggcacttttcgatttttcgatca
gaacgggttttcctacgtgacggggcagaatcacttgacaccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCTGCGTATGGCTGTGAGCCA 122 179 1428 Antisense
TGTGAGCCATTGTACCCTAGCTTAT 405 553 1444 Antisense
GACAGATGCAAGTCCAACCTGGAAA 427 367 1474 Antisense
GACGAGAAGCCGGATTTTGTGTTTA 415 379 1519 Antisense
TATATTCACACGACACATCTCCATT 645 661 1542 Antisense
TGGAGAGCCATTTGCTTCCAACGTC 402 549 1566 Antisense
ATTAGACGCTATACCCCGAAACCAT 135 11 1677 Antisense
AAATTCTCTTCAACGCCGAGTTCTA 52 117 1763 Antisense
AATGCGAGCTTGTTGATTACCTCCC 478 165 1838 Antisense
TCAGAACGGGTTTTCCTACGTGACG 213 625 1905 Antisense
CGGGGCAGAATCACTTGACACCGCC 523 241 1928 Antisense
Sequence Source Affymetrix Proprietary Database