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[181782_at]

Description F08F1.3 /REP_DB=WormBase Gene ID /WP=CE09250 /TR=O17390 /GB=AAB71303.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 97      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 625
1 2 3 4 range
A 137.1
(-2.7)
P 		109.7
(-3)
P 		188.7
(-2.1)
P 		621.1
(3)
P 		511
B 160.6
(-2.1)
P 		145.6
(-2.3)
P 		68.4
(-3)
P 		693.2
(3)
P 		625
C 174
(-2.9)
P 		230.9
(-2.1)
P 		167.8
(-3)
P 		574.4
(3)
P 		407
avr 157.2
(-2.8) 		162.1
(-2.7) 		141.6
(-3) 		629.6
(3) 		488

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 155.5
(-3)
P 		214
(-1.2)
P 		176.7
(-2.4)
P 		333.3
(2.4)
P 		253.9
(0)
P 		351.9
(3)
P 		196
B 185.7
(-2)
P 		156.7
(-2.7)
P 		144.3
(-3)
P 		254.6
(-0.3)
P 		265.9
(0)
P 		385.3
(3)
P 		241
C 176.1
(-3)
P 		221.3
(-1.3)
P 		195
(-2.3)
P 		247.2
(-0.3)
P 		293.1
(1.5)
P 		331.9
(3)
P 		156
avr 172.4
(-3) 		197.3
(-2.2) 		172
(-3) 		278.4
(0.5) 		271
(0.2) 		356.4
(3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 49.9
(-0.7)
P 		23.8
(-3)
P 		49.3
(-0.7)
P 		90.9
(3)
P 		67
B 51.2
(-1.4)
P 		36
(-2.1)
P 		15.8
(-3)
P 		147.7
(3)
P 		132
C 57.6
(-3)
P 		66.4
(-1.7)
P 		58.5
(-2.9)
P 		96.8
(3)
P 		39
avr 52.9
(-2) 		42.1
(-2.9) 		41.2
(-3) 		111.8
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 28.7
(-3)
P 		76.1
(2)
P 		38.5
(-2)
P 		84.5
(2.9)
P 		76.6
(2)
P 		85.7
(3)
P 		57
B 64.6
(-1.4)
P 		52.2
(-2.1)
P 		35.1
(-3)
P 		67.4
(-1.2)
P 		108
(1)
P 		143.7
(3)
P 		109
C 65.3
(-1.5)
P 		67.5
(-1.3)
P 		49.6
(-3)
P 		49.7
(-3)
P 		94.8
(1.4)
P 		111.1
(3)
P 		62
avr 52.9
(-2) 		65.3
(-1) 		41.1
(-3) 		67.2
(-0.8) 		93.1
(1.3) 		113.5
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181782_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16804
Sequence Type Exemplar sequence
Representative Public ID F08F1.3 NCBI
Target Description F08F1.3 /REP_DB=WormBase Gene ID /WP=CE09250 /TR=O17390 /GB=AAB71303.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077030 NCBI Caenorhabditis elegans F08F1.3 (F08F1.3) mRNA, complete cds. 11/11 None
F08F1.3 ENSEMBL cdna:known chromosome:CEL140:X:8428821:8431243:1 gene:F08F1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012399 7/11 Cross Hyb Matching Probes None
SNAP00000012390 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8428819-8431242(+) 96.04 100.0
Public Domain and Genome References
Gene Title
Ensembl F08F1.3
Entrez Gene 184189 Entrez gene
SwissProt O17390 EMBL-EBI
WormBase CE09250 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71303 Hypothetical protein F08F1.3 [Caenorhabditis elegans] ref|NP_509431.1| F08F1.3 [Caenorhabditis elegans] 1.0E-126
blast CAE74900 Hypothetical protein CBG22766 [Caenorhabditis briggsae] 3.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509431.1 4 3-22,54-76,89-106,138-160
F08F1.3 4 3-22,54-76,89-106,138-160
Sequence
Target Sequence 
>C. ELEGANS:181782_AT
cttcttccattccgaccggaatctgatgaacaagatggtaactttacggattttccagat
ctatctcttccacagttgggaattgtaatgagccaaagaagttacgcgtacgttacagct
gcactaatcatgatgatgttcgcagcagttgtttactgtcacgttgtgtctgtacgaaaa
tcacgttttctggagcaatatcagcaacagttttttcccggatatctaattatggaattg
tttttttttttcgaggcacgcttcccgagtggtctccacttctcatcgacaggaaaaaca
tttgcccgccgccgccgtatgagcaagtcgtctgaaaagttgaaaactgtccacaacagt
ttgatttttctcattgtaatttttatcgcaaaatttgttaacttctcctttaaacatgtt
gtgttcagttcaaatattaaatttttgcatttaaaaatacttgtttattttgacaatatt
agaaatcatttcccgctgtgctttgtttttgacagtaaaattgccgacaaatacgctatt
tcaaaagttcacttgccgaacaactttctcactttgcctgttcctctttttaataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTCCATTCCGACCGGAATCTG 505 221 67 Antisense
GGATTTTCCAGATCTATCTCTTCCA 670 509 114 Antisense
TTACGCGTACGTTACAGCTGCACTA 23 683 168 Antisense
GATGATGTTCGCAGCAGTTGTTTAC 108 411 198 Antisense
AGTTGTTTACTGTCACGTTGTGTCT 377 65 213 Antisense
AAATCACGTTTTCTGGAGCAATATC 477 115 244 Antisense
AGCAACAGTTTTTTCCCGGATATCT 465 75 269 Antisense
TCTCCACTTCTCATCGACAGGAAAA 27 611 339 Antisense
TTAGAAATCATTTCCCGCTGTGCTT 572 681 545 Antisense
TTCACTTGCCGAACAACTTTCTCAC 333 687 614 Antisense
TTTGCCTGTTCCTCTTTTTAATACA 306 659 639 Antisense
Sequence Source Affymetrix Proprietary Database