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[181781_at]

Description F52D10.4 /REP_DB=WormBase Gene ID /WP=CE03390 /TR=Q20656 /GB=CAA91475.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 177.3
(3)
P 		98.5
(-3)
A 		106.8
(-2.4)
A 		133.8
(-0.3)
M 		79
B 186.4
(3)
P 		119.3
(-1.2)
A 		89.8
(-3)
A 		168.1
(1.9)
P 		97
C 136.9
(3)
P 		126.9
(2.2)
A 		61.2
(-3)
P 		128.1
(2.3)
P 		76
avr 166.9
(3) 		114.9
(-0.9) 		85.9
(-3) 		143.3
(1.3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 105.4
(1.3)
P 		116.5
(3)
P 		95.2
(-0.3)
P 		104.5
(1.1)
P 		94.7
(-0.4)
A 		78
(-3)
A 		39
B 103.8
(3)
P 		76.9
(0)
P 		49.8
(-3)
P 		79.8
(0.3)
A 		59
(-2)
P 		77.3
(0.1)
A 		54
C 74.3
(-1.2)
P 		116.1
(3)
P 		103.1
(1.7)
P 		93.8
(0.7)
M 		68.4
(-1.8)
A 		56.9
(-3)
A 		59
avr 94.5
(1.4) 		103.2
(3) 		82.7
(-0.8) 		92.7
(1.1) 		74
(-2.4) 		70.7
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 64.5
(3)
P 		21.4
(-2.8)
A 		27.9
(-1.9)
A 		19.6
(-3)
M 		45
B 59.5
(3)
P 		29.5
(-1.7)
A 		20.8
(-3)
A 		35.8
(-0.7)
P 		39
C 45.3
(3)
P 		36.5
(0.8)
A 		21.3
(-3)
P 		21.6
(-2.9)
P 		24
avr 56.4
(3) 		29.1
(-1.9) 		23.3
(-3) 		25.7
(-2.6) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 19.4
(-2.9)
P 		41.4
(3)
P 		20.7
(-2.5)
P 		26.5
(-1)
P 		28.6
(-0.4)
A 		19
(-3)
A 		22
B 36.1
(3)
P 		25.6
(0.4)
P 		12.1
(-3)
P 		21.1
(-0.8)
A 		24
(-0)
P 		28.8
(1.2)
A 		24
C 27.5
(0.1)
P 		35.4
(3)
P 		26.2
(-0.3)
P 		18.9
(-3)
M 		22.1
(-1.8)
A 		19.1
(-2.9)
A 		17
avr 27.7
(0.3) 		34.1
(3) 		19.7
(-3) 		22.2
(-2) 		24.9
(-0.8) 		22.3
(-1.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16716
Sequence Type Exemplar sequence
Representative Public ID F52D10.4 NCBI
Target Description F52D10.4 /REP_DB=WormBase Gene ID /WP=CE03390 /TR=Q20656 /GB=CAA91475.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077539 NCBI Caenorhabditis elegans F52D10.4 (F52D10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000034614 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11617514:11619716:1 11/11 None
F52D10.4 ENSEMBL cdna:known chromosome:CEL140:X:11617514:11619302:1 gene:F52D10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034609 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11617513-11619302(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D10.4
Entrez Gene 186109 Entrez gene
SwissProt Q20656 EMBL-EBI
WormBase CE03390 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE70608 Hypothetical protein CBG17285 [Caenorhabditis briggsae] 1.0E-171
blast CAA91475 Hypothetical protein F52D10.4 [Caenorhabditis elegans] ref|NP_509940.1| F52D10.4 [Caenorhabditis elegans] 1.0E-156
blast CAA91475 Hypothetical protein F52D10.4 [Caenorhabditis elegans] ref|NP_509940.1| F52D10.4 [Caenorhabditis elegans] 1.0E-153
blast CAE70608 Hypothetical protein CBG17285 [Caenorhabditis briggsae] 1.0E-125
blast CAE62348 Hypothetical protein CBG06424 [Caenorhabditis briggsae] 2.0E-20
blast CAE62348 Hypothetical protein CBG06424 [Caenorhabditis briggsae] 3.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509940.1 5 12-34,49-68,142-164,199-221,256-278
F52D10.4 5 12-34,49-68,142-164,199-221,256-278
GENEFINDER00000034614 6 12-34,49-68,142-164,199-221,256-278,293-315
Sequence
Target Sequence 
>C. ELEGANS:181781_AT
aaatgcgctcgttgaatgtggccacattacatccacttggatgttaattgaagtaactgc
agagagattcattgcggtcacaagaccttttcaatttgctccagttcatcgaaagcagag
aaggaaaagctatgcaagagttgtcggaggcttgattcgtatcccgctaattatgacaat
tgctgcatgtgtcatatgtttaccgtgtactgtggaatacactctagaaccgtgtacata
caagggaattgattcacaacagatgctcgaaacgcctttaatgcaaaacattttctacag
agtgttgtataggacggctttcctttctattgggaaaacgttcggtccttttgtgataat
atcgtttttgactatctctactctgaaaagtatgagaaaaagcatggatagcagggcgtc
aattcttattgcgcaaggccaaaatcaccttttccaagccgacaaggacaaaacaaaaag
cttgcaggcaatctccatcatgctcttaggaaaatttctttttcttagatgcctacctac
tgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCGCTCGTTGAATGTGGCCAC 357 119 291 Antisense
GTGGCCACATTACATCCACTTGGAT 146 493 308 Antisense
AGACCTTTTCAATTTGCTCCAGTTC 646 69 373 Antisense
TGTCGGAGGCTTGATTCGTATCCCG 80 559 432 Antisense
CAGATGCTCGAAACGCCTTTAATGC 627 203 550 Antisense
ATAGGACGGCTTTCCTTTCTATTGG 658 1 599 Antisense
TCGTTTTTGACTATCTCTACTCTGA 201 605 652 Antisense
GCAGGGCGTCAATTCTTATTGCGCA 616 309 701 Antisense
AATCACCTTTTCCAAGCCGACAAGG 30 171 733 Antisense
GCAATCTCCATCATGCTCTTAGGAA 169 323 778 Antisense
TTTTTCTTAGATGCCTACCTACTGC 650 673 809 Antisense
Sequence Source Affymetrix Proprietary Database