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[181779_at]

Description C53D5.2 /REP_DB=WormBase Gene ID /WP=CE23610 /TR=Q9N5V7 /GB=AAF39784.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 09      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 80      6grp_total > 29      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 208.7
(0.6)
P
114.9
(-2.4)
P
97.6
(-3)
P
281.9
(3)
P
184
B 214.1
(0.5)
P
118.1
(-3)
P
118.3
(-3)
P
280.4
(3)
P
162
C 153.8
(-1.7)
P
160.7
(-1.5)
P
111.5
(-3)
P
306.8
(3)
P
195
avr 192.2
(-0.2)
131.2
(-2.3)
109.1
(-3)
289.7
(3)
181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 265.8
(1)
P
163.6
(-1.8)
P
117
(-3)
P
158
(-1.9)
P
341.3
(3)
P
216.6
(-0.3)
P
224
B 320.8
(3)
P
183.8
(-1.1)
P
120.3
(-3)
P
226
(0.2)
P
290.6
(2.1)
P
199.8
(-0.6)
P
201
C 303.5
(3)
P
224.9
(-0.2)
P
158.2
(-3)
P
248.7
(0.7)
P
241.2
(0.4)
P
186.2
(-1.8)
P
145
avr 296.7
(3)
190.8
(-0.9)
131.8
(-3)
210.9
(-0.1)
291
(2.8)
200.9
(-0.5)
165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 76
(3)
P
24.9
(-3)
P
25.5
(-2.9)
P
41.3
(-1.1)
P
51
B 68.3
(3)
P
29.2
(-2.7)
P
27.4
(-3)
P
59.7
(1.7)
P
41
C 50.9
(2.6)
P
46.2
(0.4)
P
38.8
(-3)
P
51.7
(3)
P
13
avr 65.1
(3)
33.4
(-2.5)
30.6
(-3)
50.9
(0.5)
35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 49
(-1.2)
P
58.2
(-0.5)
P
25.5
(-3)
P
40.1
(-1.9)
P
103
(3)
P
52.7
(-0.9)
P
78
B 111.6
(2.6)
P
61.2
(-0.8)
P
29.2
(-3)
P
59.8
(-0.9)
P
118
(3)
P
74.5
(0.1)
P
89
C 112.5
(3)
P
68.6
(-0.6)
P
40.3
(-3)
P
50
(-2.2)
P
78
(0.1)
P
62.3
(-1.2)
P
72
avr 91
(2.2)
62.7
(-0.3)
31.7
(-3)
50
(-1.4)
99.7
(3)
63.2
(-0.2)
68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2599
Sequence Type Exemplar sequence
Representative Public ID C53D5.2 NCBI
Target Description C53D5.2 /REP_DB=WormBase Gene ID /WP=CE23610 /TR=Q9N5V7 /GB=AAF39784.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058309(10)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_058309 NCBI Caenorhabditis elegans C53D5.2 (C53D5.2) mRNA, complete cds. 10/11 None
GENEFINDER00000029149 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:284321:285893:1 9/11 None
C53D5.2 ENSEMBL cdna:known chromosome:CEL140:I:283500:286115:1 gene:C53D5.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:283319-285934(+) 94.18 95.58
Public Domain and Genome References
Gene Title
Ensembl C53D5.2
Entrez Gene 171616 Entrez gene
SwissProt Q9N5V7 EMBL-EBI
WormBase CE34279 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39784 Hypothetical protein C53D5.2 [Caenorhabditis elegans] ref|NP_490710.2| C53D5.2 [Caenorhabditis elegans] 1.0E-132
blast CAE74310 Hypothetical protein CBG22019 [Caenorhabditis briggsae] 1.0E-100
blast AAF39784 Hypothetical protein C53D5.2 [Caenorhabditis elegans] ref|NP_490710.2| C53D5.2 [Caenorhabditis elegans] 9.0E-80
blast CAE74310 Hypothetical protein CBG22019 [Caenorhabditis briggsae] 1.0E-73
blast CAE73485 Hypothetical protein CBG20937 [Caenorhabditis briggsae] 4.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.0E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490710.2 2 96-118,170-192
C53D5.2 2 96-118,170-192
GENEFINDER00000029149 2 42-64,116-138
Sequence
Target Sequence
>C. ELEGANS:181779_AT
ccatcaccacgttgcgaactatgcggctacgattatcgacgtggaaatatatttcaaatg
aaatctttacatgttccacacgtggatcgatcatcttgtctgctcaatgtgctctttttg
attaccgtattaattatgatattttgtggatattttacgattcaattcattcaggagaat
gcactcttaaaacgaaggtgggcgaagttttctggctcttcgcgcacagttcgacaaaca
cagcgtacacgtggaaacggcgtggctatttcagcggaaacgggaatggagacggggacg
gtagttcggatggatatttctcgcgtacacctgtctcatcactttttgacataaaagtgg
tcttgtgtgccagcatgttcttggtctcgttcattttggccctttttacacagtataaag
ccgagtccacgatattccgatgtattttccgattttttgtgatcaataagaattggatga
tcaaaaactacgatatcaaaaatgatcccgaaatggctcaccgccgcggtctccagaagt
cttcacctgttccgttaaccttatcagc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
CCATCACCACGTTGCGAACTATGCG 338 271 410 Antisense
GAACTATGCGGCTACGATTATCGAC 654 349 425 Antisense
GATCATCTTGTCTGCTCAATGTGCT 669 419 498 Antisense
AAGGTGGGCGAAGTTTTCTGGCTCT 89 159 604 Antisense
CTCTTCGCGCACAGTTCGACAAACA 99 231 625 Antisense
AAACGGCGTGGCTATTTCAGCGGAA 273 125 664 Antisense
TACACCTGTCTCATCACTTTTTGAC 253 643 735 Antisense
TGTGTGCCAGCATGTTCTTGGTCTC 133 555 773 Antisense
GTTCATTTTGGCCCTTTTTACACAG 161 445 798 Antisense
TAAAGCCGAGTCCACGATATTCCGA 189 641 825 Antisense
CACCTGTTCCGTTAACCTTATCAGC 676 199 953 Antisense
Sequence Source Affymetrix Proprietary Database