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[181778_at]

Description T14G10.8 /REP_DB=WormBase Gene ID /WP=CE06454 /TR=Q22497 /GB=CAA93094.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 30      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 55.5
(3)
A 		24.4
(-1.3)
A 		11.6
(-3)
A 		16.3
(-2.4)
A 		44
B 61.6
(3)
A 		38.7
(-0.4)
A 		21
(-3)
A 		43.3
(0.3)
A 		41
C 48.1
(1.5)
A 		13.3
(-3)
A 		16.5
(-2.6)
A 		59.8
(3)
P 		47
avr 55.1
(3) 		25.5
(-1.6) 		16.4
(-3) 		39.8
(0.6) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 53.1
(-2)
A 		22.4
(-2.7)
A 		7.7
(-3)
A 		45.5
(-2.2)
A 		206.4
(1.4)
P 		279.5
(3)
P 		272
B 8.3
(-3)
A 		12.8
(-2.9)
A 		33.6
(-2.2)
A 		26.9
(-2.4)
A 		202.4
(3)
P 		170.3
(2)
P 		194
C 7.6
(-2.9)
A 		8.1
(-2.9)
A 		20.1
(-2.4)
A 		4.2
(-3)
A 		173.3
(3)
P 		170.6
(2.9)
P 		169
avr 23
(-2.7) 		14.4
(-3) 		20.5
(-2.8) 		25.5
(-2.7) 		194
(2.6) 		206.8
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 20.2
(3)
A 		5.3
(-2)
A 		3
(-2.8)
A 		2.4
(-3)
A 		18
B 19.7
(3)
A 		9.6
(-1.1)
A 		4.9
(-3)
A 		9.2
(-1.3)
A 		15
C 15.9
(3)
A 		3.8
(-3)
A 		5.8
(-2)
A 		10.1
(0.1)
P 		12
avr 18.6
(3) 		6.2
(-2.3) 		4.6
(-3) 		7.2
(-1.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 9.8
(-2.3)
A 		8
(-2.4)
A 		1.7
(-3)
A 		11.5
(-2.1)
A 		62.3
(2.5)
P 		68
(3)
P 		66
B 2.9
(-3)
A 		4.2
(-2.9)
A 		8.2
(-2.6)
A 		7.1
(-2.7)
A 		82.2
(3)
P 		63.5
(1.6)
P 		79
C 2.8
(-2.8)
A 		2.5
(-2.8)
A 		5.1
(-2.5)
A 		0.8
(-3)
A 		56.1
(2.9)
P 		57.1
(3)
P 		56
avr 5.2
(-3) 		4.9
(-3) 		5
(-3) 		6.5
(-2.8) 		66.9
(3) 		62.9
(2.6) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8943
Sequence Type Exemplar sequence
Representative Public ID T14G10.8 NCBI
Target Description T14G10.8 /REP_DB=WormBase Gene ID /WP=CE06454 /TR=Q22497 /GB=CAA93094.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069450 NCBI Caenorhabditis elegans T14G10.8 (T14G10.8) mRNA, complete cds. 11/11 None
SNAP00000034618 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10146265:10149008:-1 11/11 None
GENEFINDER00000034628 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10146265:10146906:-1 11/11 None
T14G10.8 ENSEMBL cdna:known chromosome:CEL140:IV:10146239:10146979:-1 gene:T14G10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10146270-10146909(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14G10.8
Entrez Gene 177889 Entrez gene
SwissProt Q22497 EMBL-EBI
WormBase CE06454 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93093 Hypothetical protein T14G10.7 [Caenorhabditis elegans] ref|NP_501852.1| T14G10.7 [Caenorhabditis elegans] 0.0
blast CAE59924 Hypothetical protein CBG03410 [Caenorhabditis briggsae] 0.0
blast CAA93094 Hypothetical protein T14G10.8 [Caenorhabditis elegans] ref|NP_501851.1| T14G10.8 [Caenorhabditis elegans] 1.0E-103
blast CAA93094 Hypothetical protein T14G10.8 [Caenorhabditis elegans] ref|NP_501851.1| T14G10.8 [Caenorhabditis elegans] 1.0E-91
blast CAE59924 Hypothetical protein CBG03410 [Caenorhabditis briggsae] 1.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034618 1 52-74
Sequence
Target Sequence 
>C. ELEGANS:181778_AT
aactttcatcgtctgttttctgttatgcacgaccaactggcctcaaagaagtttccgatg
agttgccggaactacttggactaccccattcgattccactgacagattctccgccgaatt
ttgaatgtcttcctgaaccattggcacatgtttcgggatgcaattcacatttcagtatga
accatcctcctccacttctgagccctctacgtggccctgtaactgaagctgatgaggcga
tgcgcacactcagtagtcatcgagaacttcagaagcggcttcaaaacatgtcaatgcgag
gagagttgagcccttcaggatgcctggttgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTCATCGTCTGTTTTCTGTTA 420 137 176 Antisense
TTATGCACGACCAACTGGCCTCAAA 665 679 198 Antisense
ACTGGCCTCAAAGAAGTTTCCGATG 128 1 211 Antisense
GAGTTGCCGGAACTACTTGGACTAC 668 397 235 Antisense
CCCATTCGATTCCACTGACAGATTC 331 259 260 Antisense
GACAGATTCTCCGCCGAATTTTGAA 301 369 276 Antisense
GAATGTCTTCCTGAACCATTGGCAC 114 331 298 Antisense
TTGGCACATGTTTCGGGATGCAATT 224 705 316 Antisense
GAAGCGGCTTCAAAACATGTCAATG 498 343 447 Antisense
ATGCGAGGAGAGTTGAGCCCTTCAG 496 39 469 Antisense
AGCCCTTCAGGATGCCTGGTTGACA 125 77 484 Antisense
Sequence Source Affymetrix Proprietary Database