[Home] | [Total List]

[181777_at]

Description K07A12.1 /REP_DB=WormBase Gene ID /WP=CE18019 /TR=P90919 /GB=CAB03183.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 75      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 86      6grp_total > 75      4grp_total > 05      6grp_highest_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1839
1 2 3 4 range
A 1108.5
(1.7)
P 		374.8
(-3)
P 		516.8
(-2.1)
P 		1317.2
(3)
P 		942
B 959.6
(-1.2)
P 		640.4
(-2.2)
P 		405.3
(-3)
P 		2214.2
(3)
P 		1809
C 1099.3
(-0.8)
P 		476.4
(-3)
P 		552.7
(-2.7)
P 		2177.4
(3)
P 		1701
avr 1055.8
(-0.6) 		497.2
(-3) 		491.6
(-3) 		1902.9
(3) 		1411

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 735
(-3)
P 		1226.6
(2.4)
P 		1144.6
(1.5)
P 		1247.3
(2.7)
P 		947.1
(-0.7)
P 		1277.8
(3)
P 		543
B 1257.9
(3)
P 		1085.7
(0.4)
P 		856.3
(-3)
P 		1024.8
(-0.5)
P 		1125.1
(1)
P 		1199.3
(2.1)
P 		402
C 792.3
(-3)
P 		894
(-1.7)
P 		944.1
(-1)
P 		1249.2
(3)
P 		886.4
(-1.8)
P 		1058.7
(0.5)
P 		457
avr 928.4
(-3) 		1068.8
(0.4) 		981.7
(-1.7) 		1173.8
(2.9) 		986.2
(-1.6) 		1178.6
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 403.6
(3)
P 		81.4
(-3)
P 		135.1
(-2)
P 		192.8
(-0.9)
P 		322
B 306
(0.4)
P 		158.2
(-2)
P 		93.9
(-3)
P 		471.8
(3)
P 		378
C 363.9
(2.9)
P 		137
(-3)
P 		192.6
(-1.6)
P 		367.1
(3)
P 		230
avr 357.8
(3) 		125.5
(-3) 		140.5
(-2.6) 		343.9
(2.6) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 135.5
(-3)
P 		436.2
(3)
P 		249.3
(-0.7)
P 		316.3
(0.6)
P 		285.8
(-0)
P 		311.1
(0.5)
P 		301
B 437.7
(2.5)
P 		361.4
(0.7)
P 		207.9
(-3)
P 		271.4
(-1.5)
P 		457.1
(3)
P 		447.2
(2.8)
P 		249
C 293.7
(-0.2)
P 		272.8
(-1.3)
P 		240.3
(-3)
P 		251.2
(-2.4)
P 		286.8
(-0.6)
P 		354.4
(3)
P 		114
avr 289
(-0.6) 		356.8
(2.4) 		232.5
(-3) 		279.6
(-1) 		343.2
(1.8) 		370.9
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2012
Sequence Type Exemplar sequence
Representative Public ID K07A12.1 NCBI
Target Description K07A12.1 /REP_DB=WormBase Gene ID /WP=CE18019 /TR=P90919 /GB=CAB03183.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059946 NCBI Caenorhabditis elegans K07A12.1 (K07A12.1) mRNA, complete cds. 11/11 None
SNAP00000033545 ENSEMBL cdna:SNAP chromosome:CEL140:I:8674720:8677819:1 11/11 None
GENEFINDER00000033554 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8674918:8677819:1 11/11 None
K07A12.1 ENSEMBL cdna:known chromosome:CEL140:I:8674720:8677908:1 gene:K07A12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8674848-8677750(+) 95.7 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A12.1
Entrez Gene 172669 Entrez gene
SwissProt P90919 EMBL-EBI
WormBase CE18019 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:266734_AT expressed protein at
CANINE:1604101_AT similar to KIAA1049 protein cfa
CANINE:1589683_AT similar to KIAA1049 protein cfa
CANINE:1585774_AT similar to KIAA1049 protein cfa
CANINE_2:CFA.11517.1.A1_AT similar to KIAA1049 protein cfa
CANINE_2:CFA.11928.1.A1_AT similar to KIAA1049 protein cfa
CANINE_2:CFA.17045.1.S1_AT similar to KIAA1049 protein cfa
CANINE_2:CFA.17045.2.S1_S_AT similar to KIAA1049 protein cfa
CANINE_2:CFA.19177.1.S1_AT similar to KIAA1049 protein cfa
CANINE_2:CFA.19177.1.S1_S_AT similar to KIAA1049 protein cfa
CANINE_2:CFAAFFX.30309.1.S1_AT similar to KIAA1049 protein cfa
DROSGENOME1:152346_S_AT dm
DROSOPHILA_2:1624396_AT dm
CHICKEN:GGA.6193.1.S1_AT similar to FKSG26 protein gga
HG-U133_PLUS_2:213311_S_AT KIAA1049 protein hs
HG-U133A_2:213311_S_AT KIAA1049 protein hs
HG-U133A:213311_S_AT KIAA1049 protein hs
HG-U133_PLUS_2:214704_AT KIAA1049 protein hs
HG-U133A_2:214704_AT KIAA1049 protein hs
HG-U133A:214704_AT KIAA1049 protein hs
HU35KSUBA:T83237_AT KIAA1049 protein hs
HU35KSUBD:RC_AA424509_AT KIAA1049 protein hs
HG-U133A:221495_S_AT KIAA1049 protein hs
HG-U133_PLUS_2:221495_S_AT KIAA1049 protein hs
HG-U133A_2:221495_S_AT KIAA1049 protein hs
U133_X3P:G12276139_3P_A_AT KIAA1049 protein hs
U133_X3P:HS.317585.0.S1_3P_AT KIAA1049 protein hs
U133_X3P:HS.227835.2.A1_3P_S_AT KIAA1049 protein hs
HG-U95AV2:33416_AT KIAA1049 protein hs
HG-U95AV2:41267_AT KIAA1049 protein hs
HG-U95AV2:41268_G_AT KIAA1049 protein hs
HG-U95C:57842_F_AT KIAA1049 protein hs
MOE430A:1451081_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430A_2:1451081_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430_2:1451081_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MG-U74AV2:98951_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MG-U74AV2:98952_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MG-U74BV2:106511_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOE430A:1437204_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430A_2:1437204_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430_2:1437204_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOE430A:1424053_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430A_2:1424053_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430_2:1424053_A_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOE430A:1437205_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430A_2:1437205_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOUSE430_2:1437205_AT DNA segment, Chr 8, ERATO Doi 325, expressed mm
MOE430B:1460109_AT DNA segment, Chr 8, ERATO Doi 325, expressed, mRNA (cDNA clone MGC:36794 IMAGE:3498003) mm
MOUSE430_2:1460109_AT DNA segment, Chr 8, ERATO Doi 325, expressed, mRNA (cDNA clone MGC:36794 IMAGE:3498003) mm
MOUSE430_2:1459240_AT DNA segment, Chr 8, ERATO Doi 325, expressed, mRNA (cDNA clone MGC:36794 IMAGE:3498003) mm
MOE430B:1459240_AT DNA segment, Chr 8, ERATO Doi 325, expressed, mRNA (cDNA clone MGC:36794 IMAGE:3498003) mm
MU19KSUBA:TC18830_S_AT DNA segment, Chr 8, ERATO Doi 325, expressed, mRNA (cDNA clone MGC:36794 IMAGE:3498003) mm
MU19KSUBB:TC31317_AT DNA segment, Chr 8, ERATO Doi 325, expressed, mRNA (cDNA clone MGC:36794 IMAGE:3498003) mm
MU19KSUBC:TC40619_AT DNA segment, Chr 8, ERATO Doi 325, expressed, mRNA (cDNA clone MGC:36794 IMAGE:3498003) mm
RG-U34B:RC_AI013466_AT similar to FKSG26 protein (predicted) rn
RG-U34B:RC_AA899289_G_AT similar to FKSG26 protein (predicted) rn
RG-U34B:RC_AA899289_AT similar to FKSG26 protein (predicted) rn
RG-U34C:RC_AI231159_AT similar to FKSG26 protein (predicted) rn
RAE230A:1371870_AT similar to FKSG26 protein (predicted) rn
RAT230_2:1371870_AT similar to FKSG26 protein (predicted) rn
RAE230B:1391346_AT similar to FKSG26 protein (predicted) rn
RAT230_2:1391346_AT similar to FKSG26 protein (predicted) rn
RAE230B:1392621_AT similar to FKSG26 protein (predicted) rn
RAT230_2:1392621_AT similar to FKSG26 protein (predicted) rn
RG-U34B:RC_AI070117_AT Similar to FKSG26 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03183 Hypothetical protein K07A12.1 [Caenorhabditis elegans] ref|NP_492347.1| K07A12.1 [Caenorhabditis elegans] 0.0
blast CAE68899 Hypothetical protein CBG14871 [Caenorhabditis briggsae] 1.0E-164
blast CAE68899 Hypothetical protein CBG14871 [Caenorhabditis briggsae] 1.0E-152
blast AAV27337 Hc38 [Haemonchus contortus] 1.0E-102
blast AAV27337 Hc38 [Haemonchus contortus] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR006994 EMBL-EBI Protein of unknown function DUF654 1.0E-126
Pfam IPR006994 EMBL-EBI Protein of unknown function DUF654 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181777_AT
aaatgcctgaagccttgctctttttggaaggagccactagaaaagtagccacgtctactg
atacaaaggaaaaagaggaatgtgaagaatggagagagaaacggaacaaaatgtatcatg
gaagatctccaaatgttgatcgctttggtcaacttcttgatgaaattccaggacaatctc
tatctgatccagttccaccacaaaatgggcgatgtggatattcgaaagaaggcggagtta
atattgccagacaaatgatggatgacacgtttcttggtggattcattaattcgttacttc
cacatttcgatggagaactttcattccaagaacagctaaatcgatatggtggagagttta
ttcgtttcctcacaaatcgattaactggagctgaacaaggaatcaacgatgcactagata
ttgccaatggatggagagaacgaagaaatgagttggatgctcaagaagctcaaggagaag
ccggtgaagctcgtgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCCTGAAGCCTTGCTCTTTTT 335 119 1175 Antisense
GAGCCACTAGAAAAGTAGCCACGTC 394 385 1205 Antisense
TAGCCACGTCTACTGATACAAAGGA 235 649 1220 Antisense
GTTGATCGCTTTGGTCAACTTCTTG 556 437 1309 Antisense
GGACAATCTCTATCTGATCCAGTTC 7 527 1345 Antisense
ATCCAGTTCCACCACAAAATGGGCG 360 39 1361 Antisense
GGATGACACGTTTCTTGGTGGATTC 520 513 1434 Antisense
ATTAATTCGTTACTTCCACATTTCG 134 13 1459 Antisense
GAGAACTTTCATTCCAAGAACAGCT 3 393 1487 Antisense
GTTTATTCGTTTCCTCACAAATCGA 595 447 1530 Antisense
AGGAGAAGCCGGTGAAGCTCGTGTG 84 55 1647 Antisense
Sequence Source Affymetrix Proprietary Database