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[181774_at]

Description F10A3.15 /REP_DB=WormBase Gene ID /WP=CE18584 /TR=O62148 /GB=CAB07350.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 03      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 101.8
(1.2)
P 		58.8
(-1.2)
A 		27.5
(-3)
A 		133.7
(3)
A 		106
B 52.9
(0)
A 		41.7
(-3)
A 		54.5
(0.4)
A 		64
(3)
A 		22
C 9.6
(-3)
A 		17.6
(-2.8)
A 		13.4
(-2.9)
A 		263.1
(3)
P 		254
avr 54.8
(-1.9) 		39.4
(-2.6) 		31.8
(-3) 		153.6
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 88.6
(3)
P 		25.1
(-3)
A 		39.5
(-1.6)
A 		36.3
(-1.9)
P 		26.4
(-2.8)
A 		24.7
(-3)
A 		64
B 126
(3)
P 		83.8
(0.9)
P 		64.1
(-0.1)
A 		59.3
(-0.3)
A 		19.5
(-2.3)
A 		6.3
(-3)
A 		120
C 66.1
(2.4)
P 		71.7
(3)
A 		57
(1.4)
P 		21.2
(-2.5)
A 		33.4
(-1.2)
A 		16.4
(-3)
A 		55
avr 93.6
(3) 		60.2
(0.4) 		53.5
(-0.1) 		38.9
(-1.2) 		26.4
(-2.2) 		15.8
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 37.1
(3)
P 		12.8
(-1.9)
A 		7.2
(-3)
A 		19.6
(-0.5)
A 		30
B 16.9
(3)
A 		10.3
(-3)
A 		12.6
(-0.9)
A 		13.6
(0)
A 		7
C 3.2
(-3)
A 		5.1
(-2.7)
A 		4.7
(-2.8)
A 		44.4
(3)
P 		41
avr 19.1
(0.7) 		9.4
(-2.6) 		8.2
(-3) 		25.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 16.3
(3)
P 		8.9
(-1.3)
A 		8.6
(-1.5)
A 		9.2
(-1.1)
P 		8
(-1.8)
A 		6
(-3)
A 		10
B 43.9
(3)
P 		27.9
(0.7)
P 		15.6
(-1.1)
A 		15.7
(-1.1)
A 		7.9
(-2.2)
A 		2.4
(-3)
A 		42
C 24.5
(3)
P 		21.9
(2.2)
A 		14.5
(0)
P 		4.3
(-3)
A 		10.8
(-1.1)
A 		5.5
(-2.6)
A 		20
avr 28.2
(3) 		19.6
(0.8) 		12.9
(-0.9) 		9.7
(-1.7) 		8.9
(-1.9) 		4.6
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12837
Sequence Type Exemplar sequence
Representative Public ID F10A3.15 NCBI
Target Description F10A3.15 /REP_DB=WormBase Gene ID /WP=CE18584 /TR=O62148 /GB=CAB07350.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074674(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074674 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-111) (str-111) mRNA, complete cds. 11/11 None
SNAP00000000102 ENSEMBL cdna:SNAP chromosome:CEL140:V:16170573:16171709:-1 11/11 None
F10A3.15 ENSEMBL cdna:known chromosome:CEL140:V:16170573:16171709:-1 gene:F10A3.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16170572-16171709(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-111
Ensembl F10A3.15
Entrez Gene 184283 Entrez gene
SwissProt O62148 EMBL-EBI
WormBase CE35457 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07350 Hypothetical protein F10A3.15 [Caenorhabditis elegans] ref|NP_507075.2| Seven TM Receptor family member (str-111) [Caenorhabditis elegans] 0.0
blast CAE46671 Hypothetical protein K05D4.9 [Caenorhabditis elegans] emb|CAE46675.1| Hypothetical protein K05D4.9 [Caenorhabditis elegans] ref|NP_001024031.1| K05D4.9 [Caenorhabditis elegans] 1.0E-156
blast CAB07345 Hypothetical protein F10A3.5 [Caenorhabditis elegans] ref|NP_507071.1| Seven TM Receptor family member (str-109) [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.4E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507075.2 7 10-32,45-64,93-115,128-150,205-227,255-277,287-309
F10A3.15 7 10-32,45-64,93-115,128-150,205-227,255-277,287-309
SNAP00000000102 7 10-32,45-64,93-115,128-150,205-227,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:181774_AT
atttcttttatcgttatctatctgtgaaatctccatctaacttgtcaatattttctctga
aagctgctcctatttgggttatatctctcagtgtcaactttgtgatttggttcttttgct
tttttaatttaaactccccgtctccaatgaaagatgaagagctgattcctgagttttggg
aggcttactgtcttaaatcaaatgagtatacctacactggacctcactactattacacag
acaattcaactggagaatggaaatttcatattccgtcgtttgtggctgaaggctatacag
ctggaaatatagctattgcaatcattctattgagcatatttggcgttaaaacttacaacc
atctttataaacttggtggaatgtctagtctgaactcgcgtgaaattcagagccaattgt
tcaaaactttggtggtccaaactatattcccaagtatatttttatttttcccagtgtcat
gcttagttttgttcccagttttcggaatcagaattggagaaaatgctaatctgatcatga
tttcattttctatatatccatgcttcgaacctcttgtcgccatttgttgcatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTTTTATCGTTATCTATCTGT 224 17 263 Antisense
GAAATCTCCATCTAACTTGTCAATA 145 363 288 Antisense
GAAAGCTGCTCCTATTTGGGTTATA 341 359 321 Antisense
GGGTTATATCTCTCAGTGTCAACTT 662 495 338 Antisense
TGTGATTTGGTTCTTTTGCTTTTTT 221 555 363 Antisense
GAGTTTTGGGAGGCTTACTGTCTTA 670 387 433 Antisense
TACACTGGACCTCACTACTATTACA 402 643 475 Antisense
ATTCCGTCGTTTGTGGCTGAAGGCT 693 7 532 Antisense
GGAATGTCTAGTCTGAACTCGCGTG 57 533 640 Antisense
TATTTTTCCCAGTGTCATGCTTAGT 319 661 725 Antisense
CCTCTTGTCGCCATTTGTTGCATTA 688 267 832 Antisense
Sequence Source Affymetrix Proprietary Database