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[181773_at]

Description F14F9.3 /REP_DB=WormBase Gene ID /WP=CE09389 /TR=Q9GUC7 /GB=AAF98617.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 22      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 33.1
(0.6)
P 		8.3
(-3)
A 		16.8
(-1.8)
A 		49.7
(3)
P 		41
B 54.2
(3)
A 		26.1
(-2.7)
A 		24.7
(-3)
A 		38.3
(-0.2)
A 		30
C 44.4
(2.9)
P 		33.8
(0.7)
A 		16
(-3)
A 		44.7
(3)
P 		29
avr 43.9
(2.9) 		22.7
(-2.2) 		19.2
(-3) 		44.2
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 99.7
(3)
P 		63.9
(0.8)
P 		48.8
(-0.1)
A 		65.8
(0.9)
P 		5.9
(-2.7)
A 		1.6
(-3)
A 		98
B 110.2
(3)
P 		62.6
(-0.5)
P 		71.5
(0.2)
P 		27.8
(-3)
A 		42.3
(-1.9)
P 		30.6
(-2.8)
A 		82
C 114.1
(3)
P 		65.8
(-0.3)
P 		42.4
(-1.9)
A 		45.7
(-1.6)
P 		32.7
(-2.5)
P 		25.6
(-3)
A 		89
avr 108
(3) 		64.1
(0) 		54.2
(-0.6) 		46.4
(-1.2) 		27
(-2.5) 		19.3
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.1
(3)
P 		1.8
(-3)
A 		4.4
(-1.5)
A 		7.3
(0.2)
P 		10
B 17.3
(3)
A 		6.4
(-2.6)
A 		5.7
(-3)
A 		8.2
(-1.7)
A 		12
C 14.7
(3)
P 		9.7
(-0.3)
A 		5.6
(-3)
A 		7.5
(-1.7)
P 		9
avr 14.7
(3) 		6
(-2.5) 		5.2
(-3) 		7.7
(-1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 18.4
(1.8)
P 		22.7
(3)
P 		10.6
(-0.3)
A 		16.7
(1.4)
P 		1.8
(-2.6)
A 		0.4
(-3)
A 		22
B 38.3
(3)
P 		20.8
(-0.4)
P 		17.4
(-1.1)
P 		7.4
(-3)
A 		17.2
(-1.1)
P 		11.4
(-2.2)
A 		31
C 42.3
(3)
P 		20.1
(-1)
P 		10.8
(-2.6)
A 		9.2
(-2.9)
P 		10.6
(-2.6)
P 		8.6
(-3)
A 		34
avr 33
(3) 		21.2
(0.3) 		12.9
(-1.6) 		11.1
(-2) 		9.9
(-2.3) 		6.8
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15164
Sequence Type Exemplar sequence
Representative Public ID F14F9.3 NCBI
Target Description F14F9.3 /REP_DB=WormBase Gene ID /WP=CE09389 /TR=Q9GUC7 /GB=AAF98617.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071974 NCBI Caenorhabditis elegans F14F9.3 (F14F9.3) mRNA, complete cds. 11/11 None
SNAP00000039408 ENSEMBL cdna:SNAP chromosome:CEL140:V:5132574:5141273:1 11/11 None
GENEFINDER00000039418 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5138032:5141273:1 11/11 None
F14F9.3 ENSEMBL cdna:known chromosome:CEL140:V:5138008:5141301:1 gene:F14F9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5138031-5141273(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F9.3
Entrez Gene 178902 Entrez gene
SwissProt Q9GUC7 EMBL-EBI
WormBase CE09389 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504375 F14F9.3 [Caenorhabditis elegans] gb|AAF98617.1| Hypothetical protein F14F9.3 [Caenorhabditis elegans] 0.0
blast NP_504374 F14F9.4 [Caenorhabditis elegans] gb|AAF98619.1| Hypothetical protein F14F9.4 [Caenorhabditis elegans] 0.0
blast CAE64080 Hypothetical protein CBG08684 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181773_AT
acgcttcttcaaattgcctgtttgtgtggcaaagaaatttacaacgtccggatgcctgaa
caatttatcgaatgtcctggctgcaagacaaatgtaaatatggaaacaaagaaaattttc
gagaaacattattacgttccattcgatcctataacaagaaagcttgctaagaaaggatat
tacacgtatgaggacaaagagggtaaaactatatttcttccaagagcaacaatatccacc
gaaattgaaagcattcctgtaatcaaggcgtccgtcattgaagtatgtgtagcggctaga
gatgtgaggtacaatgttcatacaagaaatcgagctgtaaaccgagagcatgctttgatt
cgaaagggtattttggaaaccgaaattgtagagaatctactaggaactgtcgtgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCTTCTTCAAATTGCCTGTTTGT 544 91 1930 Antisense
ACAACGTCCGGATGCCTGAACAATT 12 113 1970 Antisense
AATTTATCGAATGTCCTGGCTGCAA 493 175 1991 Antisense
TATTACGTTCCATTCGATCCTATAA 382 661 2059 Antisense
GTAAAACTATATTTCTTCCAAGAGC 652 461 2132 Antisense
CCAAGAGCAACAATATCCACCGAAA 221 277 2149 Antisense
GCATTCCTGTAATCAAGGCGTCCGT 179 307 2180 Antisense
AGGCGTCCGTCATTGAAGTATGTGT 601 53 2195 Antisense
GTGTAGCGGCTAGAGATGTGAGGTA 192 485 2216 Antisense
GCTGTAAACCGAGAGCATGCTTTGA 640 295 2263 Antisense
GAATCTACTAGGAACTGTCGTGTAT 11 329 2322 Antisense
Sequence Source Affymetrix Proprietary Database