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[181772_s_at]

Description Y48E1C.2 /REP_DB=WormBase Gene ID /WP=CE16654 /TR=O62483 /GB=CAB07703.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 90      6grp_total > 99      4grp_total > 41      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 177.6
(-1.1)
P 		206.1
(3)
P 		164.5
(-3)
P 		183
(-0.3)
P 		42
B 167.4
(-2.8)
P 		225.6
(3)
P 		205.5
(1)
P 		164.9
(-3)
P 		61
C 147.7
(-3)
P 		151.5
(-2.5)
P 		192
(3)
P 		185.3
(2.1)
P 		44
avr 164.2
(-3) 		194.4
(3) 		187.3
(1.6) 		177.7
(-0.3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 210.3
(2.7)
P 		128.2
(-3)
P 		196.7
(1.7)
P 		169.3
(-0.2)
P 		215.1
(3)
P 		152.5
(-1.3)
P 		87
B 198.4
(0.5)
P 		153.7
(-3)
P 		189.3
(-0.2)
P 		196.3
(0.3)
P 		221.6
(2.3)
P 		231.1
(3)
P 		77
C 175.3
(-0.6)
P 		149.2
(-2.1)
P 		134.2
(-3)
P 		136.7
(-2.9)
P 		211.7
(1.5)
P 		237.3
(3)
P 		103
avr 194.7
(1.2) 		143.7
(-3) 		173.4
(-0.5) 		167.4
(-1) 		216.1
(3) 		207
(2.2) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 64.7
(3)
P 		44.7
(-0.2)
P 		43
(-0.4)
P 		26.8
(-3)
P 		38
B 53.4
(2.3)
P 		55.7
(3)
P 		47.6
(0.6)
P 		35.1
(-3)
P 		21
C 48.9
(-0)
P 		43.6
(-0.9)
P 		66.9
(3)
P 		31.2
(-3)
P 		36
avr 55.7
(3) 		48
(1.1) 		52.5
(2.2) 		31
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 38.8
(-2.6)
P 		45.6
(-1.2)
P 		42.8
(-1.8)
P 		42.9
(-1.7)
P 		64.9
(3)
P 		37.1
(-3)
P 		28
B 69
(0.1)
P 		51.2
(-2.3)
P 		46
(-3)
P 		52
(-2.2)
P 		90
(3)
P 		86.2
(2.5)
P 		44
C 65
(1.3)
P 		45.5
(-0.9)
P 		34.2
(-2.2)
P 		27.5
(-3)
P 		68.5
(1.7)
P 		79.4
(3)
P 		52
avr 57.6
(-0) 		47.4
(-1.8) 		41
(-3) 		40.8
(-3) 		74.5
(3) 		67.6
(1.8) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181772_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2899
Sequence Type Exemplar sequence
Representative Public ID Y48E1C.2 NCBI
Target Description Y48E1C.2 /REP_DB=WormBase Gene ID /WP=CE16654 /TR=O62483 /GB=CAB07703.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064428 NCBI Caenorhabditis elegans Y48E1C.2 (Y48E1C.2) mRNA, complete cds. 11/11 A 
SNAP00000029073 ENSEMBL cdna:SNAP chromosome:CEL140:II:13424362:13428814:1 11/11 None
GENEFINDER00000029075 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13424445:13429481:1 11/11 None
Y48E1C.2 ENSEMBL cdna:known chromosome:CEL140:II:13424402:13428814:1 gene:Y48E1C.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13424441-13428811(+) 99.55 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48E1C.2
Entrez Gene 174983 Entrez gene
SwissProt O62483 EMBL-EBI
WormBase CE16654 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265698_AT expressed protein at
CANINE:1606064_AT similar to CG11596-PA, isoform A cfa
CANINE_2:CFA.3370.1.S1_AT similar to CG11596-PA, isoform A cfa
CANINE_2:CFAAFFX.3455.1.S1_S_AT similar to CG11596-PA, isoform A cfa
DROSOPHILA_2:1624489_A_AT dm
DROSGENOME1:154980_AT dm
CHICKEN:GGA.5794.1.S1_S_AT similar to chromosome 9 open reading frame 41 gga
CHICKEN:GGAAFFX.11486.1.S1_AT similar to chromosome 9 open reading frame 41 gga
CHICKEN:GGAAFFX.20442.1.S1_S_AT similar to chromosome 9 open reading frame 41 gga
HG-U133_PLUS_2:228324_AT chromosome 9 open reading frame 41 hs
HG-U133B:228324_AT chromosome 9 open reading frame 41 hs
HU35KSUBA:AA314096_AT chromosome 9 open reading frame 41 hs
HU35KSUBC:RC_F08813_AT chromosome 9 open reading frame 41 hs
U133_X3P:HS.273829.0.A1_3P_AT chromosome 9 open reading frame 41 hs
U133_X3P:HS.257556.0.A1_3P_AT chromosome 9 open reading frame 41 hs
HG-U133_PLUS_2:241781_AT chromosome 9 open reading frame 41 hs
HG-U133B:241781_AT chromosome 9 open reading frame 41 hs
HG-U95D:82010_R_AT chromosome 9 open reading frame 41 hs
U133_X3P:HS2.438453.1.S1_3P_AT Chromosome 9 open reading frame 41 hs
U133_X3P:HS2.375774.1.S1_3P_X_AT Chromosome 9 open reading frame 41 hs
U133_X3P:1564690_3P_AT Chromosome 9 open reading frame 41 hs
HG-U133_PLUS_2:1557885_AT Chromosome 9 open reading frame 41 hs
HG-U133_PLUS_2:1564690_AT Chromosome 9 open reading frame 41 hs
HG-U133_PLUS_2:243646_AT Chromosome 9 open reading frame 41 hs
HG-U133B:243646_AT Chromosome 9 open reading frame 41 hs
HG-U95D:70153_AT Chromosome 9 open reading frame 41 hs
HU35KSUBD:RC_AA464699_AT Chromosome 9 open reading frame 41 hs
U133_X3P:HS.208675.0.A1_3P_AT Chromosome 9 open reading frame 41 hs
MG-U74BV2:109738_AT RIKEN cDNA 2410127L17 gene mm
MG-U74BV2:163778_AT RIKEN cDNA 2410127L17 gene mm
MOE430B:1429458_AT RIKEN cDNA 2410127L17 gene mm
MOUSE430_2:1429458_AT RIKEN cDNA 2410127L17 gene mm
MOE430B:1437552_AT RIKEN cDNA 2410127L17 gene mm
MOUSE430_2:1437552_AT RIKEN cDNA 2410127L17 gene mm
RG-U34B:RC_AA996652_AT similar to RIKEN cDNA 2410127L17 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB07703 Hypothetical protein Y48E1C.2 [Caenorhabditis elegans] ref|NP_496829.1| Y48E1C.2 [Caenorhabditis elegans] 0.0
blast CAE73349 Hypothetical protein CBG20781 [Caenorhabditis briggsae] 1.0E-130
blast CAE73349 Hypothetical protein CBG20781 [Caenorhabditis briggsae] 1.0E-126
blast CAE73349 Hypothetical protein CBG20781 [Caenorhabditis briggsae] 1.0E-119
blast AAH97886 Unknown (protein for MGC:115667) [Xenopus laevis] 1.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029075 2 200-222,394-416
Sequence
Target Sequence 
>C. ELEGANS:181772_S_AT
cgtctggatcaacgtgggaccgctgacgtggcacttctccgacacacccgacgaagcatc
catcgaactaccgtactcggtgatcatggaaatgattcgaaagaagggattccaagttgt
ggaggaacgagtcatcgacagtaaatacactgttaatcgacgggcgatgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTGGATCAACGTGGGACCGCTG 382 243 891 Antisense
ACCCGACGAAGCATCCATCGAACTA 172 89 936 Antisense
GACGAAGCATCCATCGAACTACCGT 267 379 940 Antisense
ATCCATCGAACTACCGTACTCGGTG 664 37 948 Antisense
GAACTACCGTACTCGGTGATCATGG 299 349 955 Antisense
TACCGTACTCGGTGATCATGGAAAT 402 649 959 Antisense
GAAAGAAGGGATTCCAAGTTGTGGA 349 357 989 Antisense
AGTTGTGGAGGAACGAGTCATCGAC 613 63 1005 Antisense
ACGAGTCATCGACAGTAAATACACT 506 93 1017 Antisense
AAATACACTGTTAATCGACGGGCGA 580 115 1033 Antisense
ACTGTTAATCGACGGGCGATGCAAT 98 95 1039 Antisense
Sequence Source Affymetrix Proprietary Database