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[181770_s_at]

Description Y54E2A.3 /REP_DB=WormBase Gene ID /WP=CE20302 /TR=Q9XWJ0 /GB=CAA21677.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 49      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 74      6grp_total > 49      4grp_total > 01      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 525
1 2 3 4 range
A 744.1
(-2.6)
P 		712.7
(-3)
P 		881.4
(-1.1)
P 		1235.1
(3)
P 		522
B 776.4
(-3)
P 		789.1
(-2.8)
P 		792.4
(-2.7)
P 		1147
(3)
P 		371
C 754.6
(-2.4)
P 		751.7
(-2.4)
P 		710.3
(-3)
P 		1126.5
(3)
P 		416
avr 758.4
(-2.9) 		751.2
(-3) 		794.7
(-2.4) 		1169.5
(3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 885
(3)
P 		526.5
(-3)
P 		585
(-2)
P 		650.1
(-0.9)
P 		805.4
(1.7)
P 		759.7
(0.9)
P 		359
B 757.2
(0.1)
P 		599.1
(-2.8)
P 		590.8
(-3)
P 		699.4
(-1)
P 		833.1
(1.6)
P 		908.8
(3)
P 		318
C 702.6
(1.6)
P 		686.5
(1)
P 		572.2
(-3)
P 		702.1
(1.5)
P 		743.5
(3)
P 		732.3
(2.6)
P 		171
avr 781.6
(2.5) 		604
(-2.4) 		582.7
(-3) 		683.9
(-0.2) 		794
(2.8) 		800.3
(3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 270.9
(3)
P 		154.7
(-3)
P 		230.4
(0.9)
P 		180.8
(-1.7)
P 		116
B 247.6
(3)
P 		194.9
(-1.9)
P 		183.6
(-3)
P 		244.4
(2.7)
P 		64
C 249.8
(3)
P 		216.1
(-0.4)
P 		247.6
(2.8)
P 		189.9
(-3)
P 		60
avr 256.1
(3) 		188.6
(-3) 		220.5
(-0.2) 		205
(-1.5) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 163.1
(-1.1)
P 		187.2
(0.1)
P 		127.4
(-3)
P 		164.9
(-1.1)
P 		243
(3)
P 		185
(-0)
P 		116
B 263.5
(0.7)
P 		199.4
(-1.3)
P 		143.5
(-3)
P 		185.2
(-1.7)
P 		338.5
(3)
P 		338.9
(3)
P 		195
C 260.4
(3)
P 		209.5
(0.4)
P 		145.6
(-2.8)
P 		141.2
(-3)
P 		240.6
(2)
P 		245.1
(2.2)
P 		119
avr 229
(1) 		198.7
(-0.3) 		138.8
(-3) 		163.8
(-1.9) 		274
(3) 		256.3
(2.2) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181770_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2644
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.3 NCBI
Target Description Y54E2A.3 /REP_DB=WormBase Gene ID /WP=CE20302 /TR=Q9XWJ0 /GB=CAA21677.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064658 NCBI Caenorhabditis elegans TACC (transforming acid coiled coil) protein family member (tac-1) (tac-1) mRNA, complete cds. 11/11 None
SNAP00000025430 ENSEMBL cdna:SNAP chromosome:CEL140:II:14752868:14761209:-1 11/11 None
GENEFINDER00000025448 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14752868:14753765:-1 11/11 None
Y54E2A.3 ENSEMBL cdna:known chromosome:CEL140:II:14752779:14753770:-1 gene:Y54E2A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14752864-14753762(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tac-1
Ensembl Y54E2A.3
Entrez Gene 175133 Entrez gene
SwissProt Q9XWJ0 EMBL-EBI
WormBase CE20302 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5813 centrosome inferred from direct assay QuickGO AmiGO
776 kinetochore inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21678 Hypothetical protein Y54E2A.5 [Caenorhabditis elegans] ref|NP_497061.1| Y54E2A.5 [Caenorhabditis elegans] 1.0E-111
blast CAA21677 Hypothetical protein Y54E2A.3 [Caenorhabditis elegans] ref|NP_497059.1| TACC (transforming acid coiled coil) protein family member (tac-1) [Caenorhabditis elegans] gb|AAG49387.1| 2P40 [Caenorhabditis elegans] 1.0E-110
blast CAA21677 Hypothetical protein Y54E2A.3 [Caenorhabditis elegans] ref|NP_497059.1| TACC (transforming acid coiled coil) protein family member (tac-1) [Caenorhabditis elegans] gb|AAG49387.1| 2P40 [Caenorhabditis elegans] 1.0E-109
blast CAE60617 Hypothetical protein CBG04258 [Caenorhabditis briggsae] 3.0E-71
blast CAE60617 Hypothetical protein CBG04258 [Caenorhabditis briggsae] 8.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000025430 1 185-204
Sequence
Target Sequence 
>C. ELEGANS:181770_S_AT
tgaagcacacgacgaaggcgctcacagagttgatcgagcggctcttgcactcggatgaat
tcgaagtccgtcgctgctcaaacggccaaatcatctcacaaggccgctgcaacggaacaa
cgccaggaaacggcatcggaggcggcggggcatcaagcgaggagctcgaaaaagcgctga
aagatcgagatgccgcccgtgccgaagccgacaagctccacgccaactacgcgacactgt
tcgcctcgttcaacacggttcgcgaagccgccaacgacatccgcggcgagtacgaggacg
cgagggacaagctgaagctcgccgccgccgaagttgacgagtggcaggcaaagttcctcg
ccgtcaaggataatgcgaattctgagcttgagagagcatccgtggagtacgacgatcttc
tccgatcccacgatgagaacacaaagggactccgtctgcgtgtaaaacgccaggaaatcg
agctctccagcaagaacgacgagatcaaggtgctcacgaaccgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCACACGACGAAGGCGCTCAC 579 573 185 Antisense
CGGCTCTTGCACTCGGATGAATTCG 137 243 223 Antisense
GGATGAATTCGAAGTCCGTCGCTGC 582 513 237 Antisense
TCAAACGGCCAAATCATCTCACAAG 433 629 262 Antisense
ATCTCACAAGGCCGCTGCAACGGAA 214 33 277 Antisense
CGTTCAACACGGTTCGCGAAGCCGC 633 245 431 Antisense
CAACGACATCCGCGGCGAGTACGAG 662 183 456 Antisense
GCCGCCGCCGAAGTTGACGAGTGGC 470 285 505 Antisense
AACACAAAGGGACTCCGTCTGCGTG 44 135 622 Antisense
AACGCCAGGAAATCGAGCTCTCCAG 88 145 650 Antisense
AGATCAAGGTGCTCACGAACCGCGT 401 65 686 Antisense
Sequence Source Affymetrix Proprietary Database