[Home] | [Total List]

[181769_s_at]

Description B0261.7 /REP_DB=WormBase Gene ID /WP=CE07709 /TR=O01442 /GB=AAB52353.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 31      6grp_total > 98      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 89.8
(-3)
P 		165.1
(-0.1)
P 		171.1
(0.1)
P 		247.8
(3)
P 		158
B 106.4
(-3)
M 		164.1
(-0.3)
P 		217.8
(2.2)
P 		234.8
(3)
P 		128
C 92.6
(-3)
P 		218.9
(1.6)
P 		256.3
(3)
P 		178.4
(0.1)
P 		164
avr 96.3
(-3) 		182.7
(1.2) 		215.1
(2.7) 		220.3
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 51.5
(-3)
A 		119.2
(-2.3)
P 		171.8
(-1.8)
P 		222.7
(-1.3)
P 		586.5
(2.3)
P 		659.4
(3)
P 		608
B 64.5
(-3)
A 		95.1
(-2.7)
P 		197.5
(-1.8)
P 		294.1
(-1)
P 		670.9
(2.4)
P 		738
(3)
P 		674
C 16.1
(-3)
A 		115.8
(-2.2)
P 		175.2
(-1.7)
P 		216.6
(-1.4)
P 		620.5
(2)
P 		747.9
(3)
P 		732
avr 44
(-3) 		110
(-2.4) 		181.5
(-1.8) 		244.5
(-1.2) 		626
(2.2) 		715.1
(3) 		671
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 32.7
(-3)
P 		35.8
(-1.5)
P 		44.7
(3)
P 		36.3
(-1.2)
P 		12
B 33.9
(-3)
M 		40.5
(-0.6)
P 		50.5
(3)
P 		50
(2.8)
P 		17
C 30.7
(-2.9)
P 		62.9
(0.3)
P 		89.3
(3)
P 		30.1
(-3)
P 		59
avr 32.4
(-3) 		46.4
(-0.1) 		61.5
(3) 		38.8
(-1.7) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 9.5
(-3)
A 		42.4
(-1.8)
P 		37.4
(-2)
P 		56.5
(-1.3)
P 		177
(3)
P 		160.5
(2.4)
P 		168
B 22.4
(-3)
A 		31.7
(-2.8)
P 		48
(-2.4)
P 		77.9
(-1.7)
P 		272.6
(2.9)
P 		275.2
(3)
P 		253
C 5.9
(-3)
A 		35.3
(-2.3)
P 		44.6
(-2.1)
P 		43.5
(-2.1)
P 		200.8
(1.8)
P 		250.4
(3)
P 		245
avr 12.6
(-3) 		36.5
(-2.3) 		43.3
(-2.1) 		59.3
(-1.7) 		216.8
(2.7) 		228.7
(3) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181769_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1367
Sequence Type Exemplar sequence
Representative Public ID B0261.7 NCBI
Target Description B0261.7 /REP_DB=WormBase Gene ID /WP=CE07709 /TR=O01442 /GB=AAB52353.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059153 NCBI Caenorhabditis elegans B0261.7 (B0261.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000040724 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5269407:5270937:-1 11/11 None
SNAP00000040718 ENSEMBL cdna:SNAP chromosome:CEL140:I:5269703:5270937:-1 11/11 None
B0261.7 ENSEMBL cdna:known chromosome:CEL140:I:5269556:5270937:-1 gene:B0261.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5269649-5270937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0261.7
Entrez Gene 172169 Entrez gene
SwissProt O01442 EMBL-EBI
WormBase CE07709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52353 Hypothetical protein B0261.7 [Caenorhabditis elegans] ref|NP_491554.1| B0261.7 [Caenorhabditis elegans] 1.0E-180
blast AAB52353 Hypothetical protein B0261.7 [Caenorhabditis elegans] ref|NP_491554.1| B0261.7 [Caenorhabditis elegans] 1.0E-178
blast CAE67378 Hypothetical protein CBG12856 [Caenorhabditis briggsae] 6.0E-59
blast CAE67378 Hypothetical protein CBG12856 [Caenorhabditis briggsae] 7.0E-59
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:181769_S_AT
gatttcatgatcaccaacgacttcggtattccacatcttccagtggctgatgtggcttcg
tatcttgataatgccaacagttgcaccgaattcgtgaaaagaaagaaaatgctcgtggac
ctgaaaaatacagttgataactgtcgtacagaaagcgatgtctatgttaaaaagctcgcc
ggtctttccttgaactgtttccaagatatactggccaagtttaaaggtagtaacaaagac
agcgaaccatcatcgaagaaagaagagaagaaaacttctcacaaagacctggaaaagcga
gcatcagatgttacccttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCATGATCACCAACGACTTCG 13 429 454 Antisense
AACGACTTCGGTATTCCACATCTTC 389 143 469 Antisense
ATCTTCCAGTGGCTGATGTGGCTTC 59 31 488 Antisense
GCTGATGTGGCTTCGTATCTTGATA 110 297 499 Antisense
ATGCCAACAGTTGCACCGAATTCGT 236 41 524 Antisense
GAAAGAAAATGCTCGTGGACCTGAA 137 359 554 Antisense
GTCTATGTTAAAAAGCTCGCCGGTC 111 451 613 Antisense
GGTCTTTCCTTGAACTGTTTCCAAG 322 503 634 Antisense
GTAACAAAGACAGCGAACCATCATC 637 461 683 Antisense
GAAAACTTCTCACAAAGACCTGGAA 635 353 723 Antisense
GCGAGCATCAGATGTTACCCTTCCA 79 291 750 Antisense
Sequence Source Affymetrix Proprietary Database