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[181768_s_at]

Description F29C4.6 /REP_DB=WormBase Gene ID /WP=CE17723 /TR=O76365 /GB=AAC19193.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 83      6grp_total > 48      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 938
1 2 3 4 range
A 497.7
(-2.6)
P 		457.8
(-3)
P 		502.8
(-2.6)
P 		1104.4
(3)
P 		647
B 561.5
(-2.4)
P 		470.4
(-3)
P 		520.6
(-2.7)
P 		1360
(3)
P 		890
C 599.2
(-1.5)
P 		422
(-3)
P 		459.3
(-2.7)
P 		1111.5
(3)
P 		690
avr 552.8
(-2.2) 		450.1
(-3) 		494.2
(-2.6) 		1192
(3) 		742

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 575.3
(1.3)
P 		428.7
(-0.9)
P 		287.5
(-3)
P 		353.3
(-2)
P 		556
(1)
P 		693.6
(3)
P 		406
B 522.7
(1)
P 		434
(-1.4)
P 		488.5
(0.1)
P 		440.4
(-1.2)
P 		375.6
(-3)
P 		595.8
(3)
P 		220
C 482.6
(1.7)
P 		521.7
(2.8)
P 		419.9
(-0.1)
P 		319.3
(-3)
P 		346
(-2.2)
P 		528.9
(3)
P 		210
avr 526.9
(1) 		461.5
(-0.7) 		398.6
(-2.3) 		371
(-3) 		425.9
(-1.6) 		606.1
(3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 181.2
(3)
P 		99.4
(-3)
P 		131.4
(-0.7)
P 		161.7
(1.6)
P 		82
B 179.1
(-0.8)
P 		116.2
(-3)
P 		120.6
(-2.8)
P 		289.8
(3)
P 		174
C 198.3
(3)
P 		121.3
(-3)
P 		160.1
(0)
P 		187.4
(2.2)
P 		77
avr 186.2
(1.4) 		112.3
(-3) 		137.4
(-1.5) 		213
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 106.1
(-0.5)
P 		152.5
(2.1)
P 		62.6
(-3)
P 		89.6
(-1.5)
P 		167.8
(2.9)
P 		168.9
(3)
P 		106
B 181.9
(0.7)
P 		144.5
(-1.4)
P 		118.6
(-2.9)
P 		116.6
(-3)
P 		152.6
(-1)
P 		222.2
(3)
P 		106
C 178.9
(3)
P 		159.2
(2)
P 		106.9
(-0.8)
P 		64.2
(-3)
P 		112
(-0.5)
P 		177.1
(2.9)
P 		115
avr 155.6
(1) 		152.1
(0.7) 		96
(-2.6) 		90.1
(-3) 		144.1
(0.3) 		189.4
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181768_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10753
Sequence Type Exemplar sequence
Representative Public ID F29C4.6 NCBI
Target Description F29C4.6 /REP_DB=WormBase Gene ID /WP=CE17723 /TR=O76365 /GB=AAC19193.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067464 NCBI Caenorhabditis elegans F29C4.6 (F29C4.6) mRNA, complete cds. 11/11 None
SNAP00000028010 ENSEMBL cdna:SNAP chromosome:CEL140:IV:118482:121697:-1 11/11 None
GENEFINDER00000028018 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:119405:121697:-1 11/11 None
F29C4.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:119279:121697:-1 gene:F29C4.6 11/11 None
F29C4.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:119294:121707:-1 gene:F29C4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:119404-121697(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29C4.6
Entrez Gene 176826 Entrez gene
SwissProt O76365 EMBL-EBI
WormBase CE17723 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15812_AT expressed protein at
ATH1-121501:267396_AT expressed protein at
CANINE_2:CFAAFFX.5231.1.S1_AT similar to LOC90353 cfa
DROSOPHILA_2:1626393_AT dm
DROSGENOME1:146864_AT dm
HG-U95E:69212_F_AT LOC90353 hs
MG-U74CV2:131153_AT cDNA sequence BC005752 mm
MOE430A:1424023_AT cDNA sequence BC005752 mm
MOUSE430A_2:1424023_AT cDNA sequence BC005752 mm
MOUSE430_2:1424023_AT cDNA sequence BC005752 mm
YEAST_2:1770020_AT Protein with a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts Sc
Protein Similarities
Method ID Description E-Value
blast AAC19193 Hypothetical protein F29C4.6 [Caenorhabditis elegans] ref|NP_499865.1| F29C4.6 [Caenorhabditis elegans] 0.0
blast CAE58498 Hypothetical protein CBG01646 [Caenorhabditis briggsae] 0.0
blast CAE58498 Hypothetical protein CBG01646 [Caenorhabditis briggsae] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR000541 EMBL-EBI Protein of unknown function UPF0021 1.7E-23
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 3.0E-11
Pfam IPR000541 EMBL-EBI Protein of unknown function UPF0021 1.7E-23
Sequence
Target Sequence 
>C. ELEGANS:181768_S_AT
atcggagccaccaaacttgttacaggacataatgcagatgatatggcagagaccttactc
atgaatgtgctccgtggtgatattgctcggctggagcggtgcacgaatattgtcaccgga
gaggaaggtgatttgccacgtgccaaacctctgaaatactgttttgaaagggatattgtg
atgtatgcgagaacaaatcaattggaatatttctatacggaatgtatctacgcaccgaat
gcctatcgaggatatgcgaggaaatatgttcgggatcttgagaaagttcatccgagggcg
attcttgacttgattcggagtggagagaaggtttccgtgaagaaggaggtcgaaatgccg
acgttgaaaatttgtgagaggtgtggttacatgacgagccaaaagctgtgcaaagcgtgt
ctactcatcgagggtctcaacactggaaacaccgacttgggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGAGCCACCAAACTTGTTACAG 615 33 505 Antisense
GACCTTACTCATGAATGTGCTCCGT 31 383 555 Antisense
GTGCTCCGTGGTGATATTGCTCGGC 211 479 571 Antisense
TTGCTCGGCTGGAGCGGTGCACGAA 267 699 587 Antisense
GAGGAAGGTGATTTGCCACGTGCCA 530 405 625 Antisense
CCACGTGCCAAACCTCTGAAATACT 467 273 640 Antisense
ATCTACGCACCGAATGCCTATCGAG 157 33 730 Antisense
AGTTCATCCGAGGGCGATTCTTGAC 237 63 789 Antisense
AAAGCTGTGCAAAGCGTGTCTACTC 494 123 906 Antisense
GTGTCTACTCATCGAGGGTCTCAAC 324 487 921 Antisense
AACACTGGAAACACCGACTTGGGAG 678 133 943 Antisense
Sequence Source Affymetrix Proprietary Database