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[181767_at]

Description Y48C3A.5 /REP_DB=WormBase Gene ID /WP=CE24384 /TR=Q9U293 /GB=CAB60417.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 473.5
(3)
P 		381.8
(0.9)
P 		206.1
(-3)
P 		369
(0.7)
P 		267
B 524.1
(3)
P 		247.5
(-2.6)
P 		227.2
(-3)
P 		328.2
(-1)
P 		297
C 478.6
(3)
P 		375
(0.7)
P 		212.5
(-3)
P 		325.8
(-0.4)
P 		266
avr 492.1
(3) 		334.8
(-0.4) 		215.3
(-3) 		341
(-0.3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 284.5
(2.2)
P 		307.9
(3)
P 		223.9
(0.1)
P 		207.5
(-0.5)
P 		201
(-0.7)
P 		136
(-3)
P 		172
B 382.5
(3)
P 		305.1
(1.1)
P 		284.5
(0.6)
P 		156.8
(-2.6)
P 		206.7
(-1.3)
P 		139.4
(-3)
P 		243
C 404.4
(3)
P 		256.3
(-0.1)
P 		228.6
(-0.7)
P 		186.4
(-1.6)
P 		218.9
(-0.9)
P 		117.9
(-3)
P 		287
avr 357.1
(3) 		289.8
(1.2) 		245.7
(0) 		183.6
(-1.6) 		208.9
(-0.9) 		131.1
(-3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 172.4
(3)
P 		82.9
(-1.5)
P 		53.9
(-3)
P 		54
(-3)
P 		119
B 167.1
(3)
P 		61.1
(-2.6)
P 		52.6
(-3)
P 		69.9
(-2.1)
P 		115
C 158.4
(3)
P 		107.8
(0.1)
P 		74.1
(-1.9)
P 		54.9
(-3)
P 		104
avr 166
(3) 		83.9
(-1.6) 		60.2
(-3) 		59.6
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 52.4
(-1.5)
P 		109.5
(3)
P 		48.8
(-1.8)
P 		52.6
(-1.5)
P 		60.7
(-0.8)
P 		33.1
(-3)
P 		76
B 133.1
(3)
P 		101.6
(0.9)
P 		69.1
(-1.2)
P 		41.5
(-3)
P 		84
(-0.2)
P 		52
(-2.3)
P 		92
C 149.9
(3)
P 		78.2
(-0.8)
P 		58.2
(-1.9)
P 		37.5
(-3)
P 		70.8
(-1.2)
P 		39.5
(-2.9)
P 		112
avr 111.8
(3) 		96.4
(1.7) 		58.7
(-1.5) 		43.9
(-2.8) 		71.8
(-0.4) 		41.5
(-3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4013
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.5 NCBI
Target Description Y48C3A.5 /REP_DB=WormBase Gene ID /WP=CE24384 /TR=Q9U293 /GB=CAB60417.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064409(9), NM_182245(11), NM_001027277(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064409 NCBI Caenorhabditis elegans Y48C3A.5a (Y48C3A.5) mRNA, complete cds. 9/11 None
NM_182245 NCBI Caenorhabditis elegans Y48C3A.5b (Y48C3A.5) mRNA, complete cds. 11/11 None
NM_001027277 NCBI Caenorhabditis elegans Y48C3A.5c (Y48C3A.5) mRNA, complete cds. 9/11 None
GENEFINDER00000006659 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13291019:13303986:1 11/11 None
Y48C3A.5b ENSEMBL cdna:known chromosome:CEL140:II:13278907:13303986:1 gene:Y48C3A.5 11/11 None
Y48C3A.5a ENSEMBL cdna:known chromosome:CEL140:II:13278907:13304105:1 gene:Y48C3A.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006612 1/11 Cross Hyb Matching Probes None
SNAP00000006613 4/11 Cross Hyb Matching Probes None
SNAP00000006614 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13272526-13303983(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y48C3A.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD57712 Hypothetical protein Y48C3A.5a [Caenorhabditis elegans] ref|NP_496810.3| Y48C3A.5a [Caenorhabditis elegans] 0.0
blast CAE73367 Hypothetical protein CBG20803 [Caenorhabditis briggsae] 0.0
blast CAD57713 Hypothetical protein Y48C3A.5b [Caenorhabditis elegans] ref|NP_872045.2| Y48C3A.5b [Caenorhabditis elegans] 0.0
blast CAI70420 Hypothetical protein Y48C3A.5c [Caenorhabditis elegans] ref|NP_001022448.1| Y48C3A.5c [Caenorhabditis elegans] 0.0
blast T31587 hypothetical protein Y48C3A.e - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496810.3 2 26-45,52-74
NP_872045.2 2 26-45,52-74
Sequence
Target Sequence 
>C. ELEGANS:181767_AT
gcaagcgaatcaggccgccaaagcgaagagatccgtttttaataagactggacacgtgga
atctgacgtgtacggtagcttgccgcagcttaaaaaacggcggttgttggaagcccgggc
tcggagcaccgatagtcgaaaaaactccgctctaatttgggcgaaacagagaaaaaagca
caacttaaacatattgctccaacgtcaattcttatcgacggcagccgtgtctagtatgga
atcgaacaactcgaccgatgacagtgatcaaagattctccaacagtttcgatagcacgag
gagtgaattggaaagacgccgcctctccctgatgaaccaagccgatgcaaattcgtcgga
cgaagctactcgaagtgtgccgagaattagtaatagggattatagtgtcgacatgcgaag
tgactcgttgtttcgggaatggagccgagtggatccagcctatgatccgttggatcggag
gcttcagcgcgggcatacggtagatcacgctgcacttggtcatccacgtcacttccaacg
tcaatactcacttgtcacgtcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGCGAATCAGGCCGCCAAAGCG 322 321 1296 Antisense
TGACGTGTACGGTAGCTTGCCGCAG 46 571 1359 Antisense
CGGGCTCGGAGCACCGATAGTCGAA 539 243 1411 Antisense
CGACGGCAGCCGTGTCTAGTATGGA 162 247 1511 Antisense
GATTCTCCAACAGTTTCGATAGCAC 165 433 1568 Antisense
TCCCTGATGAACCAAGCCGATGCAA 411 597 1621 Antisense
GGACGAAGCTACTCGAAGTGTGCCG 266 287 1653 Antisense
AATGGAGCCGAGTGGATCCAGCCTA 253 161 1733 Antisense
GCATACGGTAGATCACGCTGCACTT 116 309 1788 Antisense
TCCACGTCACTTCCAACGTCAATAC 266 589 1818 Antisense
GTCAATACTCACTTGTCACGTCATC 441 463 1835 Antisense
Sequence Source Affymetrix Proprietary Database