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[181766_at]

Description ZK1025.4 /REP_DB=WormBase Gene ID /WP=CE19331 /TR=Q9XXL9 /GB=CAA18367.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 5.2
(-3)
A 		128
(1.4)
P 		171.3
(3)
P 		17.1
(-2.6)
A 		166
B 32.8
(-1.8)
A 		93
(0.7)
P 		149.8
(3)
P 		3.5
(-3)
A 		146
C 16.1
(-3)
A 		142.8
(2.8)
P 		146.7
(3)
P 		57.4
(-1.1)
A 		131
avr 18
(-3) 		121.3
(1.5) 		155.9
(3) 		26
(-2.7) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 54.8
(3)
A 		11.6
(-2.2)
A 		8.9
(-2.5)
A 		5.7
(-2.9)
A 		5.8
(-2.9)
A 		4.9
(-3)
A 		50
B 23.6
(0.9)
A 		24.3
(1.1)
A 		33.2
(2.7)
A 		35.1
(3)
A 		27
(1.6)
A 		1.5
(-3)
A 		34
C 2.2
(-3)
A 		27.9
(1.4)
A 		37.5
(3)
A 		7.1
(-2.2)
A 		13.2
(-1.1)
A 		4.2
(-2.7)
A 		35
avr 26.9
(3) 		21.3
(1.6) 		26.5
(2.9) 		16
(0.2) 		15.3
(0) 		3.5
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 1.9
(-3)
A 		27.8
(0.6)
P 		44.8
(3)
P 		2.5
(-2.9)
A 		43
B 10.5
(-1.3)
A 		23
(0.9)
P 		34.7
(3)
P 		0.7
(-3)
A 		34
C 5.3
(-3)
A 		41.1
(1.7)
P 		51.1
(3)
P 		9.7
(-2.4)
A 		46
avr 5.9
(-2.8) 		30.6
(1) 		43.5
(3) 		4.3
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 10.1
(3)
A 		4.1
(-1)
A 		1.9
(-2.5)
A 		1.5
(-2.8)
A 		1.8
(-2.6)
A 		1.2
(-3)
A 		9
B 8.2
(1.4)
A 		8.1
(1.3)
A 		8.1
(1.3)
A 		9.3
(2)
A 		11
(3)
A 		0.6
(-3)
A 		10
C 0.8
(-3)
A 		8.5
(2.3)
A 		9.5
(3)
A 		1.4
(-2.6)
A 		4.3
(-0.6)
A 		1.4
(-2.6)
A 		9
avr 6.4
(2.5) 		6.9
(3) 		6.5
(2.6) 		4.1
(0.1) 		5.7
(1.8) 		1.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1278
Sequence Type Exemplar sequence
Representative Public ID ZK1025.4 NCBI
Target Description ZK1025.4 /REP_DB=WormBase Gene ID /WP=CE19331 /TR=Q9XXL9 /GB=CAA18367.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060526
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038829 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11464629:11471339:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060526 8/11 Cross Hyb Matching Probes A 
SNAP00000038819 6/11 Cross Hyb Matching Probes None
ZK1025.4 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11464559-11467999(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 0.0
blast CAA18370 Hypothetical protein ZK1025.3 [Caenorhabditis elegans] ref|NP_492928.1| ZK1025.3 [Caenorhabditis elegans] 0.0
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.6E-54
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.8E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038829 1 76-93
Sequence
Target Sequence 
>C. ELEGANS:181766_AT
tatgcggagctggtgatggctgggaagaatattggagcattgttatttgagaacactcat
gtcggattggagccaaatatttatacgaatgacttttctggaatgaagactctaacgttc
attaatatttttgcgccacccaagaattgtagaatttgtagaaatcaatgcttttgttgt
gtattgagcgagagacaaggagagaagtcgtttattacaataggttacatcttcaacaca
tctctcatagatatctgcgaaactcactcacccggaaaattcctgcacaactcaacaact
acactgttttccaatggaacagtactacattttcgatttaatattaaggaaattaaagct
aacgttgtggaaaaaccatatagatttttcccgaacagcacagaaggtcacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCGGAGCTGGTGATGGCTGGGA 622 655 856 Antisense
TTCATTAATATTTTTGCGCCACCCA 239 689 973 Antisense
TTTGCGCCACCCAAGAATTGTAGAA 439 669 985 Antisense
GAAATCAATGCTTTTGTTGTGTATT 629 361 1016 Antisense
TTACATCTTCAACACATCTCTCATA 535 683 1080 Antisense
TAGATATCTGCGAAACTCACTCACC 498 653 1103 Antisense
CTCACTCACCCGGAAAATTCCTGCA 276 229 1118 Antisense
AATTCCTGCACAACTCAACAACTAC 16 179 1133 Antisense
GGAACAGTACTACATTTTCGATTTA 32 527 1171 Antisense
ACCATATAGATTTTTCCCGAACAGC 211 83 1230 Antisense
TCCCGAACAGCACAGAAGGTCACAT 70 593 1244 Antisense
Sequence Source Affymetrix Proprietary Database