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[181764_at]

Description Y51B9A.7 /REP_DB=WormBase Gene ID /WP=CE19217 /TR=Q9XXC5 /GB=CAA19537.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 20.1
(1.3)
A 		9.2
(-3)
A 		18.6
(0.7)
A 		24.4
(3)
A 		15
B 6.5
(3)
A 		6.2
(2.6)
A 		2.5
(-2.6)
A 		2.2
(-3)
A 		4
C 1.1
(-3)
A 		4.5
(-2.5)
A 		22.8
(0)
A 		44.5
(3)
A 		43
avr 9.2
(-2.1) 		6.6
(-3) 		14.6
(-0.2) 		23.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 4.1
(-2.8)
A 		2.6
(-3)
A 		3.1
(-2.9)
A 		22.8
(-0.5)
A 		25.7
(-0.1)
A 		50.3
(3)
A 		48
B 2.1
(-2.8)
A 		1.3
(-3)
A 		2.9
(-2.6)
A 		2.6
(-2.7)
A 		4.2
(-2.4)
A 		28.5
(3)
A 		27
C 1.5
(-3)
A 		9.6
(-2.3)
A 		2.6
(-2.9)
A 		12.7
(-2)
A 		21.7
(-1.2)
A 		69.8
(3)
A 		68
avr 2.6
(-3) 		4.5
(-2.8) 		2.9
(-3) 		12.7
(-1.7) 		17.2
(-1.1) 		49.5
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.3
(3)
A 		2
(-3)
A 		4.9
(0.3)
A 		3.6
(-1.2)
A 		5
B 2.1
(3)
A 		1.5
(0.8)
A 		0.6
(-2.6)
A 		0.5
(-3)
A 		2
C 0.3
(-3)
A 		1.3
(-2.2)
A 		8
(3)
A 		7.5
(2.6)
A 		8
avr 3.2
(0.3) 		1.6
(-3) 		4.5
(3) 		3.9
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		5.8
(-0.3)
A 		7.8
(0.7)
A 		12.2
(3)
A 		12
B 0.7
(-2.8)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		0.7
(-2.8)
A 		1.7
(-2.2)
A 		10.6
(3)
A 		10
C 0.6
(-3)
A 		2.9
(-2.4)
A 		0.7
(-3)
A 		2.5
(-2.5)
A 		7
(-1.3)
A 		23.4
(3)
A 		23
avr 0.7
(-3) 		1.4
(-2.7) 		0.7
(-3) 		3
(-2.1) 		5.5
(-1) 		15.4
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2662
Sequence Type Exemplar sequence
Representative Public ID Y51B9A.7 NCBI
Target Description Y51B9A.7 /REP_DB=WormBase Gene ID /WP=CE19217 /TR=Q9XXC5 /GB=CAA19537.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063603 NCBI Caenorhabditis elegans Y51B9A.7 (Y51B9A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000039083 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9399971:9400409:1 11/11 None
Y51B9A.7 ENSEMBL cdna:known chromosome:CEL140:II:9399971:9400409:1 gene:Y51B9A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039073 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9399967-9400406(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51B9A.7
Entrez Gene 190140 Entrez gene
SwissProt Q9XXC5 EMBL-EBI
WormBase CE19217 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19537 Hypothetical protein Y51B9A.7 [Caenorhabditis elegans] ref|NP_496004.1| Y51B9A.7 [Caenorhabditis elegans] 7.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496004.1 1 54-76
Y51B9A.7 1 54-76
GENEFINDER00000039083 1 54-76
Sequence
Target Sequence 
>C. ELEGANS:181764_AT
gactgtacaaccgcaagcagaagcatcgggtgtacctctcgaacatgaagaacaaccaaa
aaatcaaaagcaaagaaaggcggaaaaatatttgctgcgatggtacaacgctttgagaaa
cttaccgacttgggttcagaaaacaaaaaaacgaagaattggagcttataatgtgttggt
ggtgattttatgcataatagttattgtgttaagcataattgttttgtatcaagatcctga
acagacgcatgacaagtatggaggatcaattcttctccgtgaagtcaatccatatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGTACAACCGCAAGCAGAAGCA 23 377 15 Antisense
AGCAGAAGCATCGGGTGTACCTCTC 505 77 30 Antisense
GGTGTACCTCTCGAACATGAAGAAC 126 499 43 Antisense
TTTGCTGCGATGGTACAACGCTTTG 323 669 105 Antisense
CAACGCTTTGAGAAACTTACCGACT 595 145 120 Antisense
GAGAAACTTACCGACTTGGGTTCAG 147 389 129 Antisense
GGAGCTTATAATGTGTTGGTGGTGA 193 521 175 Antisense
ATTGTTTTGTATCAAGATCCTGAAC 254 3 232 Antisense
GATCCTGAACAGACGCATGACAAGT 261 417 247 Antisense
GATCAATTCTTCTCCGTGAAGTCAA 624 421 278 Antisense
TTCTCCGTGAAGTCAATCCATATGA 647 691 287 Antisense
Sequence Source Affymetrix Proprietary Database