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[181763_at]

Description K04G2.10 /REP_DB=WormBase Gene ID /WP=CE06104 /TR=Q21229 /GB=CAB00047.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 2
(-3)
A 		33.3
(0.3)
A 		23.8
(-0.7)
A 		58.1
(3)
A 		56
B 2
(-3)
A 		6.9
(-1.8)
A 		25.7
(3)
A 		2.1
(-3)
A 		24
C 9.7
(-1.9)
A 		19.4
(-0.6)
A 		1.9
(-3)
A 		46
(3)
A 		44
avr 4.6
(-3) 		19.9
(-0) 		17.1
(-0.6) 		35.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 1
(-3)
A 		4.8
(-2.6)
A 		25
(-0.7)
A 		0.6
(-3)
A 		15.9
(-1.6)
A 		64.5
(3)
P 		64
B 8.9
(-2.8)
A 		15.8
(-2.4)
A 		35.4
(-1.2)
A 		6.3
(-3)
A 		52.1
(-0.1)
P 		101.5
(3)
P 		95
C 28.1
(-1.8)
A 		2.9
(-3)
A 		4.8
(-2.9)
A 		35.2
(-1.5)
A 		41.6
(-1.2)
A 		130
(3)
P 		127
avr 12.7
(-2.7) 		7.8
(-3) 		21.7
(-2.1) 		14
(-2.6) 		36.5
(-1.1) 		98.7
(3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		7.2
(2)
A 		6.2
(1.2)
A 		8.5
(3)
A 		8
B 0.6
(-2.8)
A 		1.7
(-1.6)
A 		6
(3)
A 		0.4
(-3)
A 		6
C 3.2
(-0.9)
A 		5.6
(1.1)
A 		0.7
(-3)
A 		7.8
(3)
A 		7
avr 1.5
(-3) 		4.8
(1.8) 		4.3
(1.1) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1.7
(-2.4)
A 		5.5
(-0.9)
A 		0.2
(-3)
A 		4.8
(-1.2)
A 		15.7
(3)
P 		16
B 3.1
(-2.8)
A 		5.3
(-2.4)
A 		8.6
(-1.9)
A 		1.7
(-3)
A 		21.2
(0.2)
P 		37.9
(3)
P 		36
C 10.4
(-1.7)
A 		0.9
(-3)
A 		1.2
(-3)
A 		7.1
(-2.1)
A 		13.5
(-1.2)
A 		43.5
(3)
P 		43
avr 4.6
(-2.6) 		2.6
(-3) 		5.1
(-2.5) 		3
(-2.9) 		13.2
(-0.9) 		32.4
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1932
Sequence Type Exemplar sequence
Representative Public ID K04G2.10 NCBI
Target Description K04G2.10 /REP_DB=WormBase Gene ID /WP=CE06104 /TR=Q21229 /GB=CAB00047.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059819 NCBI Caenorhabditis elegans K04G2.10 (K04G2.10) mRNA, complete cds. 11/11 None
K04G2.10 ENSEMBL cdna:known chromosome:CEL140:I:8065888:8068630:1 gene:K04G2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022185 4/11 Cross Hyb Matching Probes None
GENEFINDER00000022191 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8065818-8068535(+) 97.19 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G2.10
Entrez Gene 172592 Entrez gene
SwissProt Q21229 EMBL-EBI
WormBase CE06104 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00047 Hypothetical protein K04G2.10 [Caenorhabditis elegans] ref|NP_492220.1| K04G2.10 [Caenorhabditis elegans] 1.0E-165
blast CAE60180 Hypothetical protein CBG03735 [Caenorhabditis briggsae] 1.0E-35
blast NP_701428 hypothetical protein PFL0315c [Plasmodium falciparum 3D7] gb|AAN36152.1| hypothetical protein PFL0315c [Plasmodium falciparum 3D7] 3.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492220.1 1 64-86
K04G2.10 1 64-86
Sequence
Target Sequence 
>C. ELEGANS:181763_AT
ccaggatgtaatcgtcaaattcgaaaagttcaagagttgatggacgagaggtacctgaca
aacatttgtaatgaagtggagaagaacaccatgagacttcaaattcaagatttggagaga
caagttcaaatgcgtcgatgtgagaatcggaagatgaagactattcaggaagtcgaaaag
gaaggatcaacagaatctcaagattcaattcatgaccatccaatggtaaaagtgttgatg
gagatcaacgatcaattgatgattgaaatgagaaaaaaggttgaagctccagaagaatat
ccattagaagaatggaaagatgctattgaacaaaaatggagtgaaaagtatgaaaagctt
cgtgattatgcattggatcaacaagacatggtcaaatatatggaagagaatgatgatcga
caaaaagaaagtattgagaagtataaacggaaaattggttcgatgaaaaaagtaattgaa
aagatggaattcgaaatggcacttcttcaatcggaattggaaatgaaagactcctcatgt
gtcgagaagtctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGGATGTAATCGTCAAATTCGAA 326 271 343 Antisense
GTTGATGGACGAGAGGTACCTGACA 438 435 378 Antisense
CGAGAGGTACCTGACAAACATTTGT 109 249 387 Antisense
AGAACACCATGAGACTTCAAATTCA 203 73 425 Antisense
GAGACAAGTTCAAATGCGTCGATGT 212 393 459 Antisense
GGAAGGATCAACAGAATCTCAAGAT 543 531 522 Antisense
GATTCAATTCATGACCATCCAATGG 287 431 544 Antisense
AAAGCTTCGTGATTATGCATTGGAT 198 125 696 Antisense
GCATTGGATCAACAAGACATGGTCA 364 307 712 Antisense
GAAATGAAAGACTCCTCATGTGTCG 196 361 862 Antisense
ACTCCTCATGTGTCGAGAAGTCTGT 551 99 872 Antisense
Sequence Source Affymetrix Proprietary Database