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[181761_at]

Description C47D12.3 /REP_DB=WormBase Gene ID /WP=CE05431 /TR=Q18666 /GB=CAA93764.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 19      6grp_total > 87      4grp_total > 28      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 60.8
(-1.3)
P 		43.5
(-3)
P 		54.1
(-1.9)
A 		103.7
(3)
P 		60
B 80.2
(2.6)
P 		72.4
(0.7)
P 		57.8
(-3)
P 		81.8
(3)
P 		24
C 91.8
(1.5)
P 		108.3
(3)
P 		43.5
(-3)
P 		77.9
(0.2)
A 		65
avr 77.6
(1.3) 		74.7
(0.8) 		51.8
(-3) 		87.8
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 59.3
(-2.2)
M 		56.9
(-2.3)
A 		45.1
(-3)
P 		57
(-2.3)
P 		90.6
(-0.4)
P 		151
(3)
P 		106
B 31.2
(-3)
P 		44.7
(-2.1)
P 		37.5
(-2.6)
A 		51.5
(-1.6)
P 		103.1
(2.1)
P 		116.6
(3)
P 		85
C 55.9
(-3)
P 		71.8
(-2)
P 		86.7
(-1.1)
M 		83.5
(-1.3)
P 		103
(-0)
P 		151.2
(3)
P 		95
avr 48.8
(-3) 		57.8
(-2.4) 		56.4
(-2.5) 		64
(-2) 		98.9
(0.3) 		139.6
(3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.1
(3)
P 		9.4
(-3)
P 		14.2
(-0.7)
A 		15.2
(-0.3)
P 		13
B 25.6
(3)
P 		17.9
(-0.8)
P 		13.4
(-3)
P 		17.4
(-1)
P 		12
C 30.4
(2.8)
P 		31.1
(3)
P 		15.2
(-2.3)
P 		13.1
(-3)
A 		18
avr 26
(3) 		19.5
(-0.3) 		14.3
(-3) 		15.2
(-2.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 10.9
(-2.8)
M 		20.2
(-0.7)
A 		9.8
(-3)
P 		14.4
(-2)
P 		27.3
(0.9)
P 		36.8
(3)
P 		27
B 10.9
(-2.7)
P 		14.9
(-2)
P 		9.1
(-3)
A 		13.6
(-2.2)
P 		41.9
(2.7)
P 		43.5
(3)
P 		34
C 20.7
(-2.3)
P 		21.9
(-2.1)
P 		22.1
(-2.1)
M 		16.8
(-3)
P 		33.3
(-0.1)
P 		50.6
(3)
P 		34
avr 14.2
(-2.9) 		19
(-1.9) 		13.7
(-3) 		14.9
(-2.8) 		34.2
(1.1) 		43.6
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3688
Sequence Type Exemplar sequence
Representative Public ID C47D12.3 NCBI
Target Description C47D12.3 /REP_DB=WormBase Gene ID /WP=CE05431 /TR=Q18666 /GB=CAA93764.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064092 NCBI Caenorhabditis elegans C47D12.3 (C47D12.3) mRNA, complete cds. 11/11 None
SNAP00000023904 ENSEMBL cdna:SNAP chromosome:CEL140:II:11679106:11680940:-1 11/11 None
GENEFINDER00000023912 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11679106:11680940:-1 11/11 None
C47D12.3 ENSEMBL cdna:known chromosome:CEL140:II:11679106:11680940:-1 gene:C47D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11679102-11680937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47D12.3
Entrez Gene 183547 Entrez gene
SwissProt Q18666 EMBL-EBI
WormBase CE05431 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21123.1.S1_S_AT similar to Sideroflexin-3 cfa
CANINE_2:CFAAFFX.15403.1.S1_AT similar to Sideroflexin-3 cfa
CANINE_2:CFAAFFX.15406.1.S1_AT similar to Sideroflexin-3 cfa
HG-U95AV2:40127_AT sideroflexin 3 hs
HG-U133_PLUS_2:217226_S_AT sideroflexin 3 hs
HG-U133A_2:217226_S_AT sideroflexin 3 hs
HG-U133A:217226_S_AT sideroflexin 3 hs
HG-U133_PLUS_2:220974_X_AT sideroflexin 3 hs
HG-U133A:220974_X_AT sideroflexin 3 hs
HG-FOCUS:220974_X_AT sideroflexin 3 hs
HG-U133A_2:220974_X_AT sideroflexin 3 hs
HUGENEFL:M95929_AT sideroflexin 3 hs
U133_X3P:HS.155606.2.S1_3P_S_AT sideroflexin 3 hs
HG-U95B:41946_AT Sideroflexin 3 hs
HU35KSUBB:RC_AA053586_AT Sideroflexin 3 hs
U133_X3P:HS2.406340.1.S1_3P_AT Sideroflexin 3 hs
HG-U133_PLUS_2:1559993_AT Sideroflexin 3 hs
MG-U74BV2:116085_AT sideroflexin 3 mm
MOE430A:1417893_AT sideroflexin 3 mm
MOUSE430A_2:1417893_AT sideroflexin 3 mm
MOUSE430_2:1417893_AT sideroflexin 3 mm
RG-U34A:RC_AA891880_AT sideroflexin 3 rn
RG-U34A:RC_AA891880_G_AT sideroflexin 3 rn
RG-U34B:RC_AI058526_AT sideroflexin 3 rn
RG-U34B:RC_AI071932_AT sideroflexin 3 rn
RG-U34C:RC_AA817740_AT sideroflexin 3 rn
RAE230A:1387008_AT sideroflexin 3 rn
RAT230_2:1387008_AT sideroflexin 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93764 Hypothetical protein C47D12.3 [Caenorhabditis elegans] ref|NP_496493.1| C47D12.3 [Caenorhabditis elegans] 0.0
blast CAE59454 Hypothetical protein CBG02833 [Caenorhabditis briggsae] 1.0E-166
blast CAA88076 Hypothetical protein AH6.2 [Caenorhabditis elegans] ref|NP_496040.1| AH6.2 [Caenorhabditis elegans] sp|Q09201|YP22_CAEEL Hypothetical protein AH6.2 in chromosome II 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496493.1 4 150-172,182-199,235-254,269-291
C47D12.3 4 150-172,182-199,235-254,269-291
SNAP00000023904 4 150-172,182-199,235-254,269-291
GENEFINDER00000023912 4 150-172,182-199,235-254,269-291
Sequence
Target Sequence 
>C. ELEGANS:181761_AT
ccatgtgatcttcttccattgggtcaatcaatcattcaacgccatcgtcaactacacaaa
ccggagcggaacccacaaacaggatgatagaaccttgattctttcgtattgcggtgccac
tactggagctctttcttgtgctctttcattcaattatatgctcaaaaagtggaaaaatgc
tccgccgattcttgctcgtctcgttccatttgctgctattgcattcgccaatgcaattaa
tattcctatgatgagaaacaaagaatttacaaatggaattccagttgaagatggtgaagg
tagaacaatgggattttcaacagttgcacctggtcatgctattccacaagttgtgctcag
tcgtgttggaatggcggttccaaatatggttctaggaccagtgatcttggagcaactttc
caaaactgcatggtatacacctggaatggctgcacctcttcaaacattgctctgtggatt
catgttggctttttccacaccaatttgttgtgctcttttcccacagaaaagctcaattca
agttgataagctggagctttcacttcaagatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATGTGATCTTCTTCCATTGGGTC 522 269 366 Antisense
AATCAATCATTCAACGCCATCGTCA 474 171 391 Antisense
TGATTCTTTCGTATTGCGGTGCCAC 93 563 461 Antisense
CACTACTGGAGCTCTTTCTTGTGCT 599 195 483 Antisense
TCTCGTTCCATTTGCTGCTATTGCA 597 611 564 Antisense
TCAACAGTTGCACCTGGTCATGCTA 644 629 682 Antisense
GGTCATGCTATTCCACAAGTTGTGC 657 503 697 Antisense
CTGCACCTCTTCAAACATTGCTCTG 537 237 815 Antisense
GATTCATGTTGGCTTTTTCCACACC 471 431 842 Antisense
TTGTTGTGCTCTTTTCCCACAGAAA 489 705 870 Antisense
AAGCTGGAGCTTTCACTTCAAGATC 14 151 913 Antisense
Sequence Source Affymetrix Proprietary Database