[Home] | [Total List]

[181760_s_at]

Description F32A11.3 /REP_DB=WormBase Gene ID /WP=CE17739 /TR=O62197 /GB=CAB04225.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 13.7
(-3)
A 		14.9
(-3)
A 		14.9
(-3)
A 		190.5
(3)
A 		177
B 17.1
(3)
A 		12.6
(-3)
A 		16
(1.5)
A 		15.5
(0.9)
A 		5
C 7.2
(-3)
A 		17.2
(-0.8)
A 		34.7
(3)
A 		24.7
(0.8)
A 		28
avr 12.7
(-3) 		14.9
(-2.8) 		21.9
(-2.1) 		76.9
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 648
1 2 3 4 5 6 range
A 9.3
(-3)
A 		4.6
(-3)
A 		11
(-2.9)
A 		20.6
(-2.9)
A 		385
(0.5)
P 		652.2
(3)
P 		648
B 7.5
(-3)
A 		12.1
(-3)
A 		11
(-3)
A 		48.8
(-2.6)
A 		278.5
(-0.4)
P 		628.1
(3)
P 		621
C 6.8
(-3)
A 		17
(-2.9)
A 		5.5
(-3)
A 		119.8
(-1.7)
A 		325.9
(0.7)
P 		526
(3)
P 		521
avr 7.9
(-3) 		11.2
(-3) 		9.2
(-3) 		63.1
(-2.4) 		329.8
(0.3) 		602.1
(3) 		594
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 5
(-2.6)
A 		3.2
(-3)
A 		3.9
(-2.8)
A 		27.9
(3)
A 		25
B 5.5
(3)
A 		3.1
(-3)
A 		3.7
(-1.5)
A 		3.3
(-2.5)
A 		2
C 2.4
(-3)
A 		4.9
(-1.5)
A 		12.1
(3)
A 		4.2
(-1.9)
A 		10
avr 4.3
(-2.6) 		3.7
(-3) 		6.6
(-0.9) 		11.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 1.7
(-3)
A 		1.6
(-3)
A 		2.4
(-3)
A 		5.2
(-2.9)
A 		116.2
(1.4)
P 		158.8
(3)
P 		157
B 2.6
(-3)
A 		4
(-3)
A 		2.7
(-3)
A 		12.9
(-2.7)
A 		113.2
(-0.1)
P 		234.2
(3)
P 		232
C 2.5
(-3)
A 		5.2
(-2.9)
A 		1.4
(-3)
A 		24.1
(-2.2)
A 		105.5
(0.6)
P 		176.1
(3)
P 		175
avr 2.3
(-3) 		3.6
(-3) 		2.2
(-3) 		14.1
(-2.6) 		111.6
(0.5) 		189.7
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181760_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3685
Sequence Type Exemplar sequence
Representative Public ID F32A11.3 NCBI
Target Description F32A11.3 /REP_DB=WormBase Gene ID /WP=CE17739 /TR=O62197 /GB=CAB04225.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064391 NCBI Caenorhabditis elegans F32A11.3 (F32A11.3) mRNA, complete cds. 11/11 None
SNAP00000006595 ENSEMBL cdna:SNAP chromosome:CEL140:II:13134930:13153212:-1 11/11 None
GENEFINDER00000006606 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13151441:13153212:-1 11/11 None
F32A11.3 ENSEMBL cdna:known chromosome:CEL140:II:13151351:13153282:-1 gene:F32A11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009365 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009368 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13151437-13153209(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32A11.3
Entrez Gene 174957 Entrez gene
SwissProt O62197 EMBL-EBI
WormBase CE17739 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04227 Hypothetical protein F32A11.4 [Caenorhabditis elegans] ref|NP_496791.1| F32A11.4 [Caenorhabditis elegans] 0.0
blast CAA94177 Hypothetical protein K12D12.1 [Caenorhabditis elegans] emb|CAA88867.1| Hypothetical protein K12D12.1 [Caenorhabditis elegans] ref|NP_496536.1| K12D12.1 [Caenorhabditis elegans] sp|Q23670|TOP2_CAEEL Probable DNA topoisomerase 2 (DNA topoisomerase II) 0.0
blast CAE17802 Hypothetical protein F32A11.7 [Caenorhabditis elegans] ref|NP_001022132.1| F32A11.7 [Caenorhabditis elegans] 0.0
blast CAB04225 Hypothetical protein F32A11.3 [Caenorhabditis elegans] ref|NP_496792.1| F32A11.3 [Caenorhabditis elegans] 1.0E-155
blast ABA00178 Hypothetical protein ZK783.6 [Caenorhabditis elegans] 1.0E-110
blast CAE57726 Hypothetical protein CBG00737 [Caenorhabditis briggsae] 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR001241 EMBL-EBI DNA topoisomerase II 6.0E-42
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR003594 EMBL-EBI ATP-binding region, ATPase-like 1.9E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000006595 4 721-743,750-772,787-809,816-838
Sequence
Target Sequence 
>C. ELEGANS:181760_S_AT
gaagagtctgggtactgcttcgctcgtaaaaaggatgtggagcaagaggaggaagttccg
gagatccacgtggccgctccagtcaccactccgataccgacctactcggctcctccggtc
aactatgaagctccggttttcaacaactactactcgaagggagtcagtgggccatccgag
tacattggaatgtcgaacgattgcaagttcatctacgacaatcaaagatccgtgccagca
tcttacgcccagaagaacgagtacactctcgtcaatgcagcacaaaccgcggctccagtg
atcaactatcgccaggaggagcaagaagagcacggtggtgaggacatcactcaagttcca
gcctcgccagctgttacttcaagattcagagggcttattaagaatgctcaaactccagtt
caagccactgctccaattgttgtcgagcgcatcaccccagttgctcagaacagctacgga
gccttcatgccggtcaaccagatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGTCTGGGTACTGCTTCGCTC 344 339 505 Antisense
GCTCCTCCGGTCAACTATGAAGCTC 260 299 613 Antisense
AGTCAGTGGGCCATCCGAGTACATT 678 57 666 Antisense
CAAAGATCCGTGCCAGCATCTTACG 243 193 727 Antisense
TACACTCTCGTCAATGCAGCACAAA 116 643 766 Antisense
GCGGCTCCAGTGATCAACTATCGCC 507 293 793 Antisense
CTCGCCAGCTGTTACTTCAAGATTC 610 233 867 Antisense
CAGTTCAAGCCACTGCTCCAATTGT 362 207 920 Antisense
TCCAATTGTTGTCGAGCGCATCACC 137 587 936 Antisense
CAGAACAGCTACGGAGCCTTCATGC 5 205 970 Antisense
CCTTCATGCCGGTCAACCAGATGTC 537 269 986 Antisense
Sequence Source Affymetrix Proprietary Database