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[181759_at]

Description F22D3.2 /REP_DB=WormBase Gene ID /WP=CE27138 /TR=Q19718 /GB=AAK31497.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_high_8_8 > 19      6grp_highest_nonorm > 51      6grp_total > 14      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 403.4
(1.5)
P 		330.6
(-0)
P 		193
(-3)
A 		471.4
(3)
P 		278
B 355.1
(1)
P 		325.3
(0.1)
P 		223.1
(-3)
A 		420.6
(3)
P 		198
C 461.7
(3)
P 		358.5
(-0.4)
P 		277.8
(-3)
P 		365.7
(-0.1)
P 		184
avr 406.7
(2.6) 		338.1
(0.4) 		231.3
(-3) 		419.2
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 425
1 2 3 4 5 6 range
A 689.4
(3)
P 		579
(-1)
P 		599.8
(-0.2)
P 		577.3
(-1)
P 		523
(-3)
P 		548.1
(-2.1)
P 		166
B 690.3
(2.2)
P 		624.6
(1.2)
P 		467.3
(-1.4)
P 		738.2
(3)
P 		366.1
(-3)
P 		528.5
(-0.4)
P 		372
C 791.3
(3)
P 		693.3
(1.5)
P 		484.9
(-1.8)
P 		542
(-0.9)
P 		459
(-2.2)
P 		409.8
(-3)
P 		382
avr 723.7
(3) 		632.3
(1) 		517.3
(-1.5) 		619.2
(0.7) 		449.4
(-3) 		495.5
(-2) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 146.9
(3)
P 		71.8
(-1.7)
P 		50.4
(-3)
A 		69
(-1.8)
P 		97
B 113.2
(3)
P 		80.3
(-0.2)
P 		51.7
(-3)
A 		89.6
(0.7)
P 		62
C 152.8
(3)
P 		103.1
(-0.3)
P 		96.8
(-0.7)
P 		61.7
(-3)
P 		91
avr 137.6
(3) 		85.1
(-1.4) 		66.3
(-3) 		73.4
(-2.4) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 127.1
(-3)
P 		205.9
(3)
P 		130.6
(-2.7)
P 		146.4
(-1.5)
P 		157.8
(-0.7)
P 		133.4
(-2.5)
P 		79
B 240.2
(3)
P 		207.9
(1.5)
P 		113.5
(-3)
P 		195.5
(0.9)
P 		148.7
(-1.3)
P 		197.1
(1)
P 		127
C 293.3
(3)
P 		211.6
(0.3)
P 		123.4
(-2.5)
P 		109
(-3)
P 		148.5
(-1.7)
P 		137.2
(-2.1)
P 		184
avr 220.2
(3) 		208.5
(2.3) 		122.5
(-3) 		150.3
(-1.3) 		151.7
(-1.2) 		155.9
(-0.9) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5084
Sequence Type Exemplar sequence
Representative Public ID F22D3.2 NCBI
Target Description F22D3.2 /REP_DB=WormBase Gene ID /WP=CE27138 /TR=Q19718 /GB=AAK31497.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026935(11), NM_001026936(11), NM_001026937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026935 NCBI Caenorhabditis elegans F22D3.2a (F22D3.2) mRNA, complete cds. 11/11 None
NM_001026936 NCBI Caenorhabditis elegans F22D3.2b (F22D3.2) mRNA, complete cds. 11/11 None
NM_001026937 NCBI Caenorhabditis elegans F22D3.2c (F22D3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000022828 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6944353:6946876:1 11/11 None
F22D3.2a ENSEMBL cdna:known chromosome:CEL140:II:6928699:6947815:1 gene:F22D3.2 11/11 A 
F22D3.2b ENSEMBL cdna:known chromosome:CEL140:II:6929242:6946876:1 gene:F22D3.2 11/11 None
F22D3.2c ENSEMBL cdna:known chromosome:CEL140:II:6944234:6946876:1 gene:F22D3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022820 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6929237-6946872(+) 100.0 100.0
Public Domain and Genome References
Ensembl F22D3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31497 Hypothetical protein F22D3.2a [Caenorhabditis elegans] ref|NP_001022106.1| F22D3.2a [Caenorhabditis elegans] 0.0
blast AAT81196 Hypothetical protein F22D3.2b [Caenorhabditis elegans] ref|NP_001022107.1| F22D3.2b [Caenorhabditis elegans] 0.0
blast AAV58873 Hypothetical protein F22D3.2c [Caenorhabditis elegans] ref|NP_001022108.1| F22D3.2c [Caenorhabditis elegans] 1.0E-168
blast AAK31497 Hypothetical protein F22D3.2a [Caenorhabditis elegans] ref|NP_001022106.1| F22D3.2a [Caenorhabditis elegans] 1.0E-168
Sequence
Target Sequence 
>C. ELEGANS:181759_AT
aggacaggttgtcgtcgaatcgcgcgaaaaagaatattgccgtcaattcttgcttgccat
ctcgaatttactcccaattggatgcattaaattggcaacatacaaggaacagtacctgcc
cgaatacagctctcgattcaatctcattggaggccctcacaacatggacattccactcga
agtttcggatgtaatggtttttcgtgtttcaccacgggatgtttcgattgttgatatcga
acaaatgtcgcttgtgaactgcgtcattgaagttcgtcgtcgtccggagaatgacggatc
gaatggaccacttccccgtatcgtgaaccgctaccgtgatttgcttctcgactcagatgt
gacggatactattctcgaaactgcacttcgcacgacacgtgaaggatggatgctcaaagc
aaagatctgctaccaaatgaccaaacagctttcacatccccaagtattcgaacacatcac
cggatgcggcgttgaggatcaacaagttgtttcatactggacagctggactctcgaatgc
atac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACAGGTTGTCGTCGAATCGCGC 530 53 1713 Antisense
TTCTTGCTTGCCATCTCGAATTTAC 284 689 1759 Antisense
TTCAATCTCATTGGAGGCCCTCACA 162 685 1849 Antisense
GTGTTTCACCACGGGATGTTTCGAT 76 487 1916 Antisense
AGTTCGTCGTCGTCCGGAGAATGAC 126 65 1983 Antisense
TGACGGATCGAATGGACCACTTCCC 629 567 2004 Antisense
GATTTGCTTCTCGACTCAGATGTGA 701 427 2050 Antisense
TTCTCGAAACTGCACTTCGCACGAC 305 693 2084 Antisense
AATGACCAAACAGCTTTCACATCCC 587 163 2148 Antisense
TCACATCCCCAAGTATTCGAACACA 92 627 2164 Antisense
GACAGCTGGACTCTCGAATGCATAC 542 367 2232 Antisense
Sequence Source Affymetrix Proprietary Database